Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00654 ATGGGGCATTGGACACAGCCGCTTATAGCACTCATACTAATGAAGATAGCCATAACAACCGCGGCGGCCGTCGTAGCTTCTCAAGCCTTGCCGGACTGCGACGAGTGGTGTGGCGACATGCAAATCCCATACCCATTCGGCGTGAGAAAAGGGTGTTATTTGAATGAAACATTCTTAGTTACATGCAACAAAACAACCAACCCTCCAAAGGCGTTTCTAAAAGACACCAACATTAGCGTTACTAATATCTCAATCAGCGGTGAGCTACACATGATGCAGCCCATCGTGCGGGATTGCTACAAGCATGTCGATGGTCCATTGCTCCCCAACGAAGCCAATCTTACGGTGCCGGCCGCGTTCCCAATCGCTTATGAGAGAAACAAGTTCATCGCCATCGGCTGCAATACGTTCGGTTTAATCGGCGGGGTGGTAGACGGGAGTGCGTATGTAAGTGGGTGCGTTTCGATGTGTACAAACGACAGTAAGAAAGCTGACGGGGCATGCGTTGGCAATGGGTGCTGTCAGTTGGAGATTCCACGTGGGTTGAGTGATTTGATTTTGAGTGTGGGTAGCCTCTTGAATCACACGGATGCGATGGATTTCAATCCTTGTGGGTATGCTTTTGTGGTGGGAGATGAGGGGTTTCAGTTTTCTACCAACTATATTACCAGCTTTGATGATGTGGAAGTTGAGGTTGTTAGTGGTTGGGCTATTGGAAACGACACAAATTTTGTGTGTGGACTAAACAGTGTAAGGAATAGTAGCTTCTCGGATGATGGATCGGAATTTCGTTGCGAGTGCTTCGATGGGTTCGAGGGGAATCCATATCTACCTCGAGGTTGTCAAGACATAGATGAATGCAAGGACGAGAGGCTGAATAATTGCAAGTACAAAAACAAGTGTATTAACACAATAGGAAACTATACCTGCGATTGTCCTAAGAACTTCAAGGGAGATGGAAGACATGGGGGAGAAGGTTGCATCCGAGACGTCAAGGCTTTCACTCCGATCATAATCGGAATTGGAGTCGGATTCACCGTTCTAGTGATGGGCATCACATGGGTTGTGTTGGGTTACAAAAAGTGGAAGTTCATCAAACGAAAGGAGAAATTTTTCAAAGAAAATGGCGGCTTTATACTTCAACGCCAACTTTCCCAATGGCAATCCGCCAATGAAATGGTCAGAATCTTCACCCAGGAAGAGCTGGAGAAGGCCACCAACAACTACAACGACACCACTATTGTCGGCAAAGGTGGTTATGGTACCGTTTACAAAGGCATCTTACACGACGGCTTGGCAGTGGCTATCAAGAAATCAAAGCTAGTGGACCAATCCCAAACCGACCAATTCATCAACGAACTCATCGTGCTCTCCCAAATCAACCATCGCAACGTGGTTAGGCTCTTGGGGTGCTGTTTAGAGACACAAGTTCCCTTGTTGGTCTACGAGTTTGTAACCAATGGCACGCTGTTCGACCGCATCCATGACAAAGCCAACCATGTGTCCCTCTCTTGGGAAACTCGCTTGAAAATAGCTTCGGAAACTGCCGGGGTCCTTTCGTATTTGCATTCTTCTACTTCTACTCCCATTATCCATAGAGATATCAAGACAACCAACATACTTTTAGACGATAATTACACTGCAAAGGTCTCGGATTTCGGCGCGTCCAAGTTGGTTCCGATGGATCAAACTCAGCTATCCACGATGGTGCAAGGGACGCTTGGGTATTTGGATCCTGAATACTTGTTGACAAGTGAGTTGACGGAGAAGAGCGATGTTTATAGCTTTGGAATTGTGGTTCTCGAGCTTATAACGGGGAAGAAAGCGGTGAGCTTCGATGGGCCGGAAGCTGAGAGGAATCTAGCCATGTATGTCCTTTGTGCAATGAAAGAGGATCGGTTGGAAGAAATTGTGGAGAGGAGAATGGTGAGGGAGGCCAATTTTGAGCAGATAAGAGAAGCCACTAAGCTAGCAACAAAGTGTGTGAGGATCAAAGGGGAGGAGCGGCCATGCATGAAGGAGGTAGCCATGGAGTTGGAGGGTCTGCGACTAATGCAAGGTGAGCATTCATGGGTGAATATGAATTTATCCAATGCTGATGAGATGATATGTTTGCTGGATCATGTAGCTTCAGATCCTAGCCATTTTGTTGAGAGTACGAGTTTGAATAATTCCGTGGGCGATAGCTTAAAAGCTCGAATTTTGTCGCATATCCACCACGGGAGATGA 2229 46.79 MGHWTQPLIALILMKIAITTAAAVVASQALPDCDEWCGDMQIPYPFGVRKGCYLNETFLVTCNKTTNPPKAFLKDTNISVTNISISGELHMMQPIVRDCYKHVDGPLLPNEANLTVPAAFPIAYERNKFIAIGCNTFGLIGGVVDGSAYVSGCVSMCTNDSKKADGACVGNGCCQLEIPRGLSDLILSVGSLLNHTDAMDFNPCGYAFVVGDEGFQFSTNYITSFDDVEVEVVSGWAIGNDTNFVCGLNSVRNSSFSDDGSEFRCECFDGFEGNPYLPRGCQDIDECKDERLNNCKYKNKCINTIGNYTCDCPKNFKGDGRHGGEGCIRDVKAFTPIIIGIGVGFTVLVMGITWVVLGYKKWKFIKRKEKFFKENGGFILQRQLSQWQSANEMVRIFTQEELEKATNNYNDTTIVGKGGYGTVYKGILHDGLAVAIKKSKLVDQSQTDQFINELIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLFDRIHDKANHVSLSWETRLKIASETAGVLSYLHSSTSTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVVLELITGKKAVSFDGPEAERNLAMYVLCAMKEDRLEEIVERRMVREANFEQIREATKLATKCVRIKGEERPCMKEVAMELEGLRLMQGEHSWVNMNLSNADEMICLLDHVASDPSHFVESTSLNNSVGDSLKARILSHIHHGR 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3163820 3166728 + CmoCh15G006540.1 Cmo15g00654 398162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00654 742 CDD STKc_IRAK 415 682 - -
Cmo15g00654 742 ProSitePatterns Calcium-binding EGF-like domain signature. 283 310 IPR018097 GO:0005509
Cmo15g00654 742 CDD EGF_CA 283 319 - -
Cmo15g00654 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Cmo15g00654 742 Gene3D Phosphorylase Kinase; domain 1 376 484 - -
Cmo15g00654 742 Gene3D Transferase(Phosphotransferase) domain 1 485 700 - -
Cmo15g00654 742 ProSiteProfiles EGF-like domain profile. 283 322 IPR000742 -
Cmo15g00654 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 705 IPR045274 GO:0007166
Cmo15g00654 742 SMART egfca_6 283 328 IPR001881 GO:0005509
Cmo15g00654 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 14 705 - -
Cmo15g00654 742 Gene3D Laminin 243 328 - -
Cmo15g00654 742 Pfam Protein kinase domain 409 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00654 742 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cmo15g00654 742 ProSiteProfiles Protein kinase domain profile. 409 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00654 742 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Cmo15g00654 742 SUPERFAMILY Protein kinase-like (PK-like) 389 679 IPR011009 -
Cmo15g00654 742 Pfam Calcium-binding EGF domain 283 319 IPR001881 GO:0005509
Cmo15g00654 742 Pfam Wall-associated receptor kinase galacturonan-binding 33 87 IPR025287 GO:0030247
Cmo15g00654 742 SUPERFAMILY EGF/Laminin 282 320 - -
Cmo15g00654 742 SMART serkin_6 409 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01069 Cmo15g00654 CCT
Cmo04g02519 Cmo15g00654 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02518 Cmo-Chr4:18540046 Cmo15g00654 Cmo-Chr15:3163820 3.77E-61 dispersed
Cmo04g02519 Cmo-Chr4:18545050 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo04g02520 Cmo-Chr4:18552116 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo04g02521 Cmo-Chr4:18557946 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo10g00845 Cmo-Chr10:3991282 Cmo15g00654 Cmo-Chr15:3163820 7.94E-112 dispersed
Cmo15g00654 Cmo-Chr15:3163820 Cmo15g00115 Cmo-Chr15:551544 1.78E-88 dispersed
Cmo01g01069 Cmo-Chr1:8592936 Cmo15g00654 Cmo-Chr15:3163820 1.90E-162 transposed
Cmo15g00654 Cmo-Chr15:3163820 Cmo04g02514 Cmo-Chr4:18516963 2.67E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74914 PF00069 Pkinase 5.80E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00654 - - csv:101209380 1134.78