Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00656 ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAATCAAAAGCTCAGATTCAATTATTAGAGGGTCATATCAATAATTTGGATCCTGCCGTTAAGACCTTGAAAGAGGTCATATTCATGAAACCAGATTATGTTGATGCTCACTGTGATTTGGCATCCGCTTTGCATGCAATGAGGGAAGATGAGCGAGAAATTGAGGTGTTTCAGAAGGCAATCGACTTGAAGCTTGGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGAACTCAAATGGTGAAGGAGCTTTTATAGTTGTTGAAGCCTCAAAGTTTAAGACCATTGGAGAGAAGACTGTTTTGAGACCGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTACCCGATTGAATCGCTTGGCAACCTTCCGCGGCTTCAAACTTGAGACGGCGGTGGCCGGAAATTTGATCGGCTTGTTACGTGGGGCAGTAGTCGGAGCCATCGGAATCTGGCTGAGTTTCGTTGAGGAAATGAGCTGTAAGGAAGAAAGTACTGCTTCACTATCGGTCACCCATGAGTATTGGCCTTATAAGGTGGTCCTTGCTGATTCACAAGGGATTCTACGTGCCCATGCTACTTGGGTCAGAGTTGATCCTTTTGTTCTGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGTCCCACTCGTTATCAATGGGATCAGGAATACTTCCAGCTAGAAATATATCGAAGGGTTAGTGCCCGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACNAATCCCGCAAAAGTCCGGATCGGGCTCTGAAATTGACCGAGAACCTGCCCGTTTCGTTCCGAATACGAAAAAGCTCTGTATACTTTACCCTGTTCGATCGAGGGTTCGAGGAGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGGTCTTTCACGGCAATTTCAAGCCGTTCAAATCTTCCTTTTGAGGTTCCTGGTGAGGGGGAAGAAGATGGTAGGGTTAATCGCCAAGATAATGAAATAGACCGGAGAGAGGATGGAGCTTCAGAAAGTTCGTCTTCAGACCTCAAGCGTCTCGCGGAATCATTTCGGGATCAAGGCAATACGCTTGCCGAGAATGGGAAATTACGGGAAGCACTGGGAAAATGGGAGACTGCTCTTACCTTGATGCCTGAAAATGCAGTTCTACATGAACAAAAGTCACAAGTTCTACTGGAGATTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGAGCTACTGACTTAGATCCGTCATGGGCTGAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAGAGCTTTGACAGAGCATTGGCCATTAAGCCTGATTCTGGGGATGCCCAAGACGATCGCAAAACTGCAACGCATCTAATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTGAAAATCGTTATTTTGTGGGAGATAAGTTGAACAACGTTGACGCTTTATGA 1881 45.03 MEYAESAQVEMNYYSLSLELEQSKAQIQLLEGHINNLDPAVKTLKEVIFMKPDYVDAHCDLASALHAMREDEREIEVFQKAIDLKLGHVDALYILGGLYVNSNGEGAFIVVEASKFKTIGEKTVLRPELSNALKIRSFQKITRLNRLATFRGFKLETAVAGNLIGLLRGAVVGAIGIWLSFVEEMSCKEESTASLSVTHEYWPYKVVLADSQGILRAHATWVRVDPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSFRIRKSSVYFTLFDRGFEETMKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEIDRREDGASESSSSDLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEAWGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRKTATHLIKRRKQLHSAGLSSSENRYFVGDKLNNVDAL 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3172600 3181912 + CmoCh15G006560.1 Cmo15g00656 398164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00656 626 ProSiteProfiles TPR repeat profile. 549 582 IPR019734 GO:0005515
Cmo15g00656 626 MobiDBLite consensus disorder prediction 445 478 - -
Cmo15g00656 626 SMART tpr_5 549 582 IPR019734 GO:0005515
Cmo15g00656 626 SMART tpr_5 481 514 IPR019734 GO:0005515
Cmo15g00656 626 SMART tpr_5 515 548 IPR019734 GO:0005515
Cmo15g00656 626 SMART tpr_5 55 88 IPR019734 GO:0005515
Cmo15g00656 626 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Cmo15g00656 626 Gene3D Tetratricopeptide repeat domain 471 613 IPR011990 GO:0005515
Cmo15g00656 626 ProSiteProfiles TPR repeat region circular profile. 549 581 - -
Cmo15g00656 626 Pfam Photosystem II protein 220 381 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Cmo15g00656 626 Gene3D Photosystem II CP47 reaction center protein 306 405 - -
Cmo15g00656 626 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Cmo15g00656 626 MobiDBLite consensus disorder prediction 440 478 - -
Cmo15g00656 626 Pfam Tetratricopeptide repeat 534 582 - -
Cmo15g00656 626 PANTHER PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN 223 385 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Cmo15g00656 626 SUPERFAMILY Photosystem II antenna protein-like 220 392 IPR036001 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Cmo15g00656 626 PANTHER PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN 223 385 - -
Cmo15g00656 626 SUPERFAMILY TPR-like 34 103 IPR011990 GO:0005515
Cmo15g00656 626 SUPERFAMILY TPR-like 480 599 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00656 K02704 psbB; photosystem II CP47 chlorophyll apoprotein - csv:101203269 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01129 Cmo-Chr2:6846026 Cmo15g00656 Cmo-Chr15:3172600 4.60E-47 dispersed
Cmo09g00121 Cmo-Chr9:559499 Cmo15g00656 Cmo-Chr15:3172600 4.42E-13 dispersed
Cmo15g00656 Cmo-Chr15:3172600 Cmo10g01089 Cmo-Chr10:6003951 1.50E-06 dispersed
Cmo15g00656 Cmo-Chr15:3172600 Cmo01g02008 Cmo-Chr1:14150600 5.99E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00656 Cmo_Chr15 FPKM 7.177971 7.239043 6.185015 6.232664 0.577403 0.523121 0.393498 0.0 0.0 0.0