Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00659 ATGGGATCATGTGATGACCCTGCTGTTATCGGAGAACCGGTTCGCGGCTCTATTACTCCGCTGTTCGGGTGTTCGAGTCAACCTCTTCCCAAGTATCAGTCACGCCAGGAGATGTCTTCCTTGCCATCCAATTCTAGTGACTGTCAGATGTTGGAACCAGATAGGGGACTGGGAGTGACTGCGACTAATATCTGCACGAATGCATCGGAGCCTGATACTGCAGGGGAGGATGGGACATCCAGAGGCTTCAAACATGCTGATACATTGCTATTGGATAAAAGGTTGGACTGTGATTCCGGCGATAGTGATCCCTGTTTAAATGAGGAGAACGAGGCTTGCAACGTGGGGAATGGAGCATTGAGCTTGGATATGAAAGAGTCTCAAGACGTTGATGATTTGGTTGATATTTTGGGCTGCAAAACTACCATGGAAATGATGTCTTTAGCTGGGTCATTAATGAATTCCGTTAAACCCGAAGGACTTGATAATAATAGTTGTATAATTGATGCTTCTGAAAAAGTTGAAAGCGGTGATATTGTAGAAAATGGTCCTCTTTTATCACGGATAGGTACTTGTACAGACGACTTAAAATCTCCTCACATCTGTGAAATTGTTTCTAGTTCAGCTTCTGCCGATGGATTGTCAAGTGATTTCATACATCAAAAACAGCTGGAAAATGATGGTGCTGGTTGTTCGTTTTCAGAGGTTGCAGACAGGTTAACTGAGGCTTTGGTTGAAATAGAAGCAGACATATTGAATGAGATGTCCCCTTTACAGAGTGATCAAATACTGCCAATACATATGGCACGATCAGTTGCCAATTGTGAACAATATATTTGCCAGATGGATGGGAAAGGCTTAAGTGGTACCTCTGGAGAAACAGTTAATGAATTTGCTGATATGAACAGCAATCCTGAATTGTGCTTGCAAATTTTGCCTTCACAAGGCTGCGAGAGGATTAGGGAATGCTTACAAGCTGATGATTCACCACTAACCATCCACTCTCCAGAGATTAATCGGTGTGATGAAAAGCATGACAGTAATTCCTTATCCAAGTACATTCCAGAAGTTGTGGAAGACGATTTTGTTGTCTTGACTGATAATAATGGTGATGGTGGACAACATATAGTACCTGATATGGAAAATAACTGCAATCTGGAGGAAGCCAGTATTCAAGAGAACACCAACTGTGTTGAGCTACTTGCATCCCCCTTGCCTTTTCAGCCCTTTAATTCTGAAAAATATGAATTTTATGGGATGTTGATTGGAGCAGATATGCCAATAAAGGATAATTCATGTAGTGTCAGTGATCAAGACAACAATGACACAGAGAAAGTTGGCCATGTTTCTGAAGTTAAATGTCCTGAAACAGTTCTCATGTCTTCTAAGAGGAGTGGCCGAAGGAGACCGTCAAGCCAAAAAAATGTGACAAAAAGGGCTTCCAGGAAAAGCAAAAAAATAGTGCCAGAACCGCTGATTTTTGACACAACAAGAAGAAGGAGAAGCTCTATATCTAGGCCAGCTCGTCCCTTGCCTTGGGGATCACTGGGCTTTATTATTCAGTCATTTGAAAAAATTGACGATGCTCTGGCAAATCAAAGCAAGAAGCAAGGGAATGAGAAATCTAAAGGTAATCAAGGAGGTACCAAGCGGAGTAAGAAACAGCCAAGTGAAAGTTCACATAGATCAAGAAAAGGGACCCAAGGAAAATGTGATACTTCAACTTCAACCAACCGTATTCGTTTGAAGGTTAAATTAGGGAAGAATGTGGGTCACAATTTTCTGAACATTGTGGTTCCTGAGATTGTTGATTCATCATTGTCTGCCAAGGGTATCAATTGCCATTATGGTAATGAATCATATTGGGAAGGTAATTTGGAATTTCCACCAAGTGTTGATGATCAAAAGCCTGAAGAGGGGTCTTTAAGAAAGATCTTCTGCTACAGCAAGAATGAGGATAAAGAAAAGAAATGTCCTGATGCTTCTGTTGTGAATGAACAATGTGCTAATAATGATTCAAGTTGCACCGTCACTATAGAGAAGTCATCTACAAAGCATGCAGATGATAATCTTTGTGTTTCCTCCCATATGGTTGAGCCTGTAGAAAGGGCAATTGATACCAGGAGTTTGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCGATGTTAGATATTCAAGTTGGAGCAATGCGTCAGGAAAAATTGCAGGACTCGGTGTTGCCATCTTTAGAAGATTTTGCTGCTTCTGGAAATGCTTCCAGCAGTAAGAAAGGAAGGAAGAAGGAGAAACCCTGTCAGGCAGTTAGTTGTTCTGATGAAGCTGGCACAGGTGCTTCGGCTTGCAATAACAGGTCCAAGTCATCAAAGAAGCATGGAAGAAGACTGAACGCGGACAATCAACTTGGTTCTGAGATTGAACTTCCAGAAGAGGCTTTGAAAGCAGATGGCATTCTCGAAGATAAAGAATGTTACAGAACAGATGTTGGCAGTGTGTTTCTTGAATCAGAGAATTCAAAAACATTTCTACCTTCTCAATCTGCAAGGAAGAAACATCCCAAAGGTTCAAAATCTATTAAAACAAGCAAAGGCAAGTCCAAGGCTCCTGGCTCAAAAAACAAAATAAAGAATGCTTCTAAAGAGAGGGTTTACCGACGGAAGTCTTTTAATAAGAGTATCAAGGAGGCTTTATGTGACCGAGTTGTTACTGAAACGGAAAGTCACCAAATAGTAGGAAATTACCTTGTAGATAAGCCCGAGAAAAGCAATGACATCATAGAATCCACAGTGGCAGTAAATTTGAATGTGGTACAGGGTGCTGTGAATGAGCAGTACATGCCTCCTCGCAATGCTTGGGTGCTCTGCGACGATTGTCATAAATGGCGACGCATACCAGCTTCTCTTGTGGATAGTTTAGGACATGCAAGTTGCACATGGACCTGTAAGGACAATGTGGACAAGGCTTTTGCTGACTGCTCAATCCCACAAGAGAAGTCTAATGCAGAGATTAATGCGGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCTAATAAAAGGCTAACTTATAGGGAATTAGATAGTTTTCATCCAACAACAGTGACTGCTGTTCCTCAAGAGAACAAATTTACTTCCATTAGCAGCAATCACTTTTTGCACCGCAGTCGTAAAACTCAGACTATTGATGAGATAATGGTTTGTCATTGCAAACCAGCTTTGGATGGTCGATTAGGTTGTGGAGATGAATGCTTGAATCGAATGCTCAATATTGAATGCGTTCGAGGTACATGCCCTTGCGGGGACCTTTGTTCTAATCAACAGTTCCAGAAGCGCAAGTATGCTAAATTACGGTGGTTGCGATGCGGAAAGAAGGGTTATGGGCTACAGTCAGTTGAGGATATATCGAAAGGACAGTTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGTCAAAAGGAGTATGCATTGAACGGTCATCGACATTTTTACTTCATGACACTAGATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTCATTAACCACAGTTGTGATCCAAATTGCCGCACGGAGAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGATATGTTTGGAGTTCCAAACCTTTTCTTGCGTACTTCTTTATTTACTGAAGAGTACTCTTGCTTTTTATACATTAGCAAGAAGTCATATCCTCTCCATTTATTTACTGTTTCAGGGTGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCAAAAAAATGTTATTGTGGTTCTTTCCAATGTCGAGGTTACATAGGTGGAGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTTCCAGAACCAGTGATGCTTCGTCCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTTGTTGGATGGTGTTAAAAAGCAACCCTCAGAGCATATAAAAGGGGTTAGGGATAAGAAAGATCAACCTATCAGAACTGCTGTCGAATCTAAGATTTCAGATGAAAAAGAGGATACTCCTAAGCTTTCTGCCTCGAAGATTTCAGAAGCAAAAGAGGATCCTCTTAACCTTTCTGCCTCTACAATTTCACCATTGCACAGTTCGTTGGAATTCGAAGACTCAAAGGTAGCATCACCTACTCCATTGGCTGATATTACCCATCAGACTGAAGATGTGACGAGCCAACCTGTGTTTGTGGATCAGCCAGAAATATCTCCTGGTGACAATAATTCTGACAAAAATACATGCTCTATTGAGCAGGAGGCAAAGTTATCAGTTGCTGAAATTGATGCTCGTAAGAAGTCTAAGCTGGATGCTGTTGAAGATAAGAAAGTATATATAAAGTCGCATCTTCGGATGAAAACATCGCGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCTGTAGAAAAAGTTCAAATAACTAACAGGCCCCAGATTTCCTCTGTAAAGCCCAAGCGATTGGTAGATGGTTCTCCTGGTAACCGCTTTGAAGCAGTTGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGATACTTAAAGCTTCTTCTCCTGACTGCTGCATCAGGTGCAAGTGCCAGCGGTGAAGCAATCCAGAGCAATCGAGATCTGTCAATGATCCTTGATGCTCTTTTGAAGACAAAGTCACGAGTAGTACTGACTGACATAATAAACAAAAACGGTTTGCGGATGCTGCATAACATAATGAAGCAATATAGAAGTGACTTCAAAAAGATACCGATTCTTCGGAAGCTTTTGAAGGTCCTAGAATACTTGGTTATGAGAGAGATACTCACCTCAGAGCATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGCTTAAGGGACTCTTTACTGTCGCTGACAGAGCATGATGACAAACAGGTACATCAAATTGCTCGAAGTTTTCGGGACAGATGGTTCCCCAGACATACCAGAAAATTTGTTTACTCTGAGAGGGAGGATGGAAGATTGGAAGTTTACAGGGGTTCAAACTGCAGTAGGTTTACAGCATCACACAGTTATCGGCGTGATCAGGATTCCAGACCCACAGATGCAATTGATTGTGTGAAACAGTCAATGTCTACATCTCTACCAGATGCTCATCCTGCAGAGGTCTGTACTATGGCTTCCACAGCTGGTCACTCATTGAATGGACAAAAAGTCTGTAAGCGTAAGAGTCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAAAATCTGTGCAGCAATTCAATTCCAGCCAATTAAGTAGTGTTGGAGTGGTGTCAATGCTGATAGACAAGGTAAACAGTGATGATAAGGATTTCTCCCTCTCTGATTCTGTTGGAGTACGTGGTAGCCAAGACGATGATATCAGGGCAGACAGTGCAGTGCAGAACATCCCTGAAGATATTCCTCCTGGATTTTCTCCCTTCAGTCTCCCCGTGGCTTCTTCAAGTGCTTTTTCAACAGTTTTAGATCCTCCCCGACAGAGTATTGGCAAATTGAGTAGTGCTTTTTCCACGGTTGGGTACCCACAGGAAAAATTCATTTCTTGCTTGCCTGTGTCCTATGGAATTCCGTTTTCTATTGTTGAGCAATGTGGAACGTCCCGTGCAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCCTACCACCATATCCCCGAGGTAAGCGAGGCCCACCTACGTCTGCCTGTGGTACTGCAGTTGAACAATCTTCTCAAGAAATGCAGGTCAACTGCCATGATTCTCGAACTTCTTTCTCAGAAGAAAACCCTCCTAGTACAAGTAATTACCAACAGGATTCATGCAATCTATCAAACATCCAACAAACATCGAAACGAGCAAAGGAATCATCGTATGACTTGGGAAGAAAGTACTTTAGGCAGGAAAAGTGGCGTAATACAAAGTTTGCCCCCCCGAGAACGGATCAGTGGGGATACCAGGGGAACTTCAGAAGTGGGGTGAGCACTCCAGGTGATGACAATATACCCAACGAAGGGATAAGTCTATATTGCTCAGATGAAGCAAGCGGTAGAGGGGATAAAGCTAATGATGATTTTTATCAGCATTTGCAGAACCAAAATCAGCGTTGA 6282 42.28 MGSCDDPAVIGEPVRGSITPLFGCSSQPLPKYQSRQEMSSLPSNSSDCQMLEPDRGLGVTATNICTNASEPDTAGEDGTSRGFKHADTLLLDKRLDCDSGDSDPCLNEENEACNVGNGALSLDMKESQDVDDLVDILGCKTTMEMMSLAGSLMNSVKPEGLDNNSCIIDASEKVESGDIVENGPLLSRIGTCTDDLKSPHICEIVSSSASADGLSSDFIHQKQLENDGAGCSFSEVADRLTEALVEIEADILNEMSPLQSDQILPIHMARSVANCEQYICQMDGKGLSGTSGETVNEFADMNSNPELCLQILPSQGCERIRECLQADDSPLTIHSPEINRCDEKHDSNSLSKYIPEVVEDDFVVLTDNNGDGGQHIVPDMENNCNLEEASIQENTNCVELLASPLPFQPFNSEKYEFYGMLIGADMPIKDNSCSVSDQDNNDTEKVGHVSEVKCPETVLMSSKRSGRRRPSSQKNVTKRASRKSKKIVPEPLIFDTTRRRRSSISRPARPLPWGSLGFIIQSFEKIDDALANQSKKQGNEKSKGNQGGTKRSKKQPSESSHRSRKGTQGKCDTSTSTNRIRLKVKLGKNVGHNFLNIVVPEIVDSSLSAKGINCHYGNESYWEGNLEFPPSVDDQKPEEGSLRKIFCYSKNEDKEKKCPDASVVNEQCANNDSSCTVTIEKSSTKHADDNLCVSSHMVEPVERAIDTRSLDPGTSPDSEVINSMLDIQVGAMRQEKLQDSVLPSLEDFAASGNASSSKKGRKKEKPCQAVSCSDEAGTGASACNNRSKSSKKHGRRLNADNQLGSEIELPEEALKADGILEDKECYRTDVGSVFLESENSKTFLPSQSARKKHPKGSKSIKTSKGKSKAPGSKNKIKNASKERVYRRKSFNKSIKEALCDRVVTETESHQIVGNYLVDKPEKSNDIIESTVAVNLNVVQGAVNEQYMPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFADCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELDSFHPTTVTAVPQENKFTSISSNHFLHRSRKTQTIDEIMVCHCKPALDGRLGCGDECLNRMLNIECVRGTCPCGDLCSNQQFQKRKYAKLRWLRCGKKGYGLQSVEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLDGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKICLEFQTFSCVLLYLLKSTLAFYTLARSHILSIYLLFQGEEVTFDYNYVRVFGAAAKKCYCGSFQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRPDGRSWNNNLPTAVSLLDGVKKQPSEHIKGVRDKKDQPIRTAVESKISDEKEDTPKLSASKISEAKEDPLNLSASTISPLHSSLEFEDSKVASPTPLADITHQTEDVTSQPVFVDQPEISPGDNNSDKNTCSIEQEAKLSVAEIDARKKSKLDAVEDKKVYIKSHLRMKTSRKPGSIKKGKVSSVEKVQITNRPQISSVKPKRLVDGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVMREILTSEHINGGPPCPGMESLRDSLLSLTEHDDKQVHQIARSFRDRWFPRHTRKFVYSEREDGRLEVYRGSNCSRFTASHSYRRDQDSRPTDAIDCVKQSMSTSLPDAHPAEVCTMASTAGHSLNGQKVCKRKSRWDQPADTSLDLRSKEQKLESKSVQQFNSSQLSSVGVVSMLIDKVNSDDKDFSLSDSVGVRGSQDDDIRADSAVQNIPEDIPPGFSPFSLPVASSSAFSTVLDPPRQSIGKLSSAFSTVGYPQEKFISCLPVSYGIPFSIVEQCGTSRAENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSACGTAVEQSSQEMQVNCHDSRTSFSEENPPSTSNYQQDSCNLSNIQQTSKRAKESSYDLGRKYFRQEKWRNTKFAPPRTDQWGYQGNFRSGVSTPGDDNIPNEGISLYCSDEASGRGDKANDDFYQHLQNQNQR 2093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3196833 3214381 - CmoCh15G006590.1 Cmo15g00659 398167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00659 2093 SUPERFAMILY SET domain 1263 1293 IPR046341 -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 750 804 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 29 48 - -
Cmo15g00659 2093 Pfam SET domain 1128 1225 IPR001214 GO:0005515
Cmo15g00659 2093 SMART set_7 1117 1237 IPR001214 GO:0005515
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 533 576 - -
Cmo15g00659 2093 CDD SET_SETD2 1116 1296 IPR044437 GO:0010452|GO:0046975
Cmo15g00659 2093 Pfam AWS domain 1079 1114 IPR006560 GO:0005634|GO:0018024
Cmo15g00659 2093 ProSiteProfiles SET domain profile. 1117 1234 IPR001214 GO:0005515
Cmo15g00659 2093 Pfam CW-type Zinc Finger 953 999 IPR011124 GO:0008270
Cmo15g00659 2093 ProSiteProfiles AWS domain profile. 1065 1115 IPR006560 GO:0005634|GO:0018024
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 1961 2012 - -
Cmo15g00659 2093 Gene3D SET domain 1015 1312 IPR046341 -
Cmo15g00659 2093 PANTHER SET DOMAIN PROTEINS 465 2012 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 843 882 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 1344 1386 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 533 553 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 483 502 - -
Cmo15g00659 2093 Gene3D - 950 1010 - -
Cmo15g00659 2093 ProSiteProfiles Post-SET domain profile. 1280 1296 IPR003616 -
Cmo15g00659 2093 ProSiteProfiles Zinc finger CW-type profile. 947 1001 IPR011124 GO:0008270
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 467 482 - -
Cmo15g00659 2093 SUPERFAMILY SET domain 1041 1225 IPR046341 -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 2051 2093 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 1344 1384 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 554 568 - -
Cmo15g00659 2093 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 465 2012 - -
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 460 508 - -
Cmo15g00659 2093 SMART shorttest3 1065 1116 IPR006560 GO:0005634|GO:0018024
Cmo15g00659 2093 MobiDBLite consensus disorder prediction 1945 2014 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00659 - - - bhj:120075567 3390.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02507 Cmo15g00659 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00478 Cmo-Chr10:2135040 Cmo15g00659 Cmo-Chr15:3196833 6.06E-17 dispersed
Cmo15g00659 Cmo-Chr15:3196833 Cmo15g01509 Cmo-Chr15:10241565 9.16E-34 dispersed
Cmo15g00659 Cmo-Chr15:3196833 Cmo04g02507 Cmo-Chr4:18450568 3.53E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11156 PF00856 SET 9.20E-12 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00659 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.616066 3.004172 3.618996