Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00663 ATGATGAGAATTTGCAGCTATGAGAGAAACAAACTTCCACTATGTAGATTGTTGGCTAGGCTGTACAGTTCTGGTGAACAAGTTGATACGGTCTCGGATTCAACCAAGAGTATATGTAAAATCATGATGACATGCCAAACACTGGCGCTTGAAACTGCCCTTGATCAAAGTGGGATTAGGATTTCACCTGAGATAGTTGAGGCTGTCCTAAAAAGATTTGAGAATGCTGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAACGAAGCTATGTCCATAGTGTGAGGGCTTACCACTCTATGATCGAGTCTTTAGCTAAGATAAGGCAGTACCAGATGGTGTGGGATTTGGTGAATGTTATGAGGAATAAGGAGATTCTAAATGTTGAGACGTTCTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAACAGTTTATACATTTAATATCATGGAAAAATACAACATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGAGTGCTCTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACAGTATGAAGGATCAATTTGTTCCCGACTCGAAAACTTACAGCATACTCATTGAAGGATGGGGTAGGGCTCCAAATCTTCCAAAGGCAAGGGAGATTTTTAGAGAAATGATTGATAGCGGGTGCGTTCCTGATGTAGTGACATATAGCATTATGGTTGATGTTCTTTGCAAAGCAGGACGAGTCGACGAAGCAGTTGGCATTGTAAAAGAAATGGATTCTAATAATTGTGGACCGACATCATTTGTCTTTAGTGTTTTGGTACATACATATGGTGTAGAAAATCGGATCGAGGAGGCAGTCTCTACGTTCTTGGAGATGGAAAGAAATGGAGTAAGGGCTGATGTAGCAGCATATAATGCTTTAATCTCTGCTTTCTGTAAAGCAAACAGGATTAAGAATGTGTATAGGGTGTTAAAGGACATGGAATTAAAGGGTGTTAGCCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCAGTGGTGAGACAGATGAGGCGTTTAGGATGTTTCGAAGGATGGTCAAAGTGTGCGAACCAGACGTAGATTCGTATACCATGATCATAAAAATGTTCTGCGGGAGGAAGGAGGTTGATATGGCTCTTAAAGTTTGGAATTATATGAAGAAGAAGCAGTTTGTTCCGAGCATGCACACGTTTTCTGTTCTTATTAATGGACTGTGTCAAATAGGCAATGCTACAAAAGCTTGTGTATTGTTGGAAGAGATGATAGAGAAAGGAATACGGCCTTCTGGTGTCACATTTGGAAGGTTGAGACACTTATTGATCAAGGAAGGCAGAGAAGATGTTCTAAAATTTCTGCAGGACAAAATGAATTTACTTGTCAAGGAGCCAATGTGTGATTGA 1443 39.99 MMRICSYERNKLPLCRLLARLYSSGEQVDTVSDSTKSICKIMMTCQTLALETALDQSGIRISPEIVEAVLKRFENAGMLAYRFFEWASKQRSYVHSVRAYHSMIESLAKIRQYQMVWDLVNVMRNKEILNVETFCIIMRKYARAQKVEETVYTFNIMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGRAPNLPKAREIFREMIDSGCVPDVVTYSIMVDVLCKAGRVDEAVGIVKEMDSNNCGPTSFVFSVLVHTYGVENRIEEAVSTFLEMERNGVRADVAAYNALISAFCKANRIKNVYRVLKDMELKGVSPNSRTCNIIINSLIGSGETDEAFRMFRRMVKVCEPDVDSYTMIIKMFCGRKEVDMALKVWNYMKKKQFVPSMHTFSVLINGLCQIGNATKACVLLEEMIEKGIRPSGVTFGRLRHLLIKEGREDVLKFLQDKMNLLVKEPMCD 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3240927 3242369 - CmoCh15G006630.1 Cmo15g00663 398171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Cmo15g00663 480 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Cmo15g00663 480 Gene3D Tetratricopeptide repeat domain 368 436 IPR011990 GO:0005515
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cmo15g00663 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 477 - -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 307 339 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Cmo15g00663 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cmo15g00663 480 Pfam PPR repeat family 372 421 IPR002885 -
Cmo15g00663 480 Pfam PPR repeat family 304 350 IPR002885 -
Cmo15g00663 480 Pfam PPR repeat family 164 209 IPR002885 -
Cmo15g00663 480 Gene3D Tetratricopeptide repeat domain 263 367 IPR011990 GO:0005515
Cmo15g00663 480 Gene3D Tetratricopeptide repeat domain 45 193 IPR011990 GO:0005515
Cmo15g00663 480 Pfam PPR repeat 99 127 IPR002885 -
Cmo15g00663 480 Pfam PPR repeat 272 301 IPR002885 -
Cmo15g00663 480 Pfam PPR repeat 230 261 IPR002885 -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cmo15g00663 480 PANTHER OS03G0761300 PROTEIN 14 477 - -
Cmo15g00663 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00663 - - - mcha:111011765 895.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00930 Cmo-Chr3:7066111 Cmo15g00663 Cmo-Chr15:3240927 3.16E-11 dispersed
Cmo04g02400 Cmo-Chr4:17878026 Cmo15g00663 Cmo-Chr15:3240927 9.29E-46 dispersed
Cmo14g01768 Cmo-Chr14:13679426 Cmo15g00663 Cmo-Chr15:3240927 1.41E-21 dispersed
Cmo01g00280 Cmo-Chr1:1324487 Cmo15g00663 Cmo-Chr15:3240927 2.05E-14 transposed
Cmo01g00989 Cmo-Chr1:6544652 Cmo15g00663 Cmo-Chr15:3240927 1.62E-14 transposed
Cmo01g02050 Cmo-Chr1:14331341 Cmo15g00663 Cmo-Chr15:3240927 7.59E-83 transposed
Cmo04g02198 Cmo-Chr4:16324477 Cmo15g00663 Cmo-Chr15:3240927 2.29E-136 transposed
Cmo09g00047 Cmo-Chr9:195021 Cmo15g00663 Cmo-Chr15:3240927 9.40E-15 transposed
Cmo12g01031 Cmo-Chr12:9637202 Cmo15g00663 Cmo-Chr15:3240927 2.16E-16 transposed
Cmo13g00936 Cmo-Chr13:8213747 Cmo15g00663 Cmo-Chr15:3240927 1.31E-24 transposed
Cmo14g01409 Cmo-Chr14:11540759 Cmo15g00663 Cmo-Chr15:3240927 5.91E-86 transposed
Cmo14g02207 Cmo-Chr14:15705266 Cmo15g00663 Cmo-Chr15:3240927 9.77E-14 transposed
Cmo15g01479 Cmo-Chr15:10046501 Cmo15g00663 Cmo-Chr15:3240927 4.21E-57 transposed
Cmo17g00089 Cmo-Chr17:480657 Cmo15g00663 Cmo-Chr15:3240927 6.12E-14 transposed
Cmo17g00850 Cmo-Chr17:7881154 Cmo15g00663 Cmo-Chr15:3240927 2.50E-07 transposed
Cmo15g00663 Cmo-Chr15:3240927 Cmo09g00747 Cmo-Chr9:3769968 6.79E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00663 Cmo_Chr15 FPKM 54.129826 53.975967 62.193508 59.143898 45.788708 44.551888 50.179897 72.373993 75.262505 82.431297