Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00668 ATGTCCGCTCATAATCGCCGCCCTTCGTTTTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCCTCGTCGTCCGATAATGTCGGAAAGGTTGTGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATCTCAAGAGTGTGTCTCATAATGCTGCTAAAAGCTCTGTTCCGCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCAAGGAAGAGTTCCCCTGCTAGAACTCGCATTGCTAACTTGCCGGCGGCGGCTCATACGGCCACATTGATTGATGTCAAAACGACGAATTCAATTGTCCCTAGCAATGTTCCAGCAATCTCAAGAACTGATGCCACCGCCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTGTCACTTTCCTTGGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCTGAAGTTGAGTACATGGACAATACTGATGTCCCAGCTGTTGATTCCGTTGAGAGGAAAACTAAAACCAGTCTCTGCATTTCAGGTCACCCACCAATTAAAGGTAGCATATGCAATAGAGATGCACTTGCAGAAATGGAAACAGATAGCGGTATCATTGATGTTGATACCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCTAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATGTAAATTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTGCCAGATACTTTATATTTGACAGTGAACTACATCGATCGATACCTATCGGGAAACTCGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATACTTTAAAGAAGAGGTATTGCAAATGGAATCATCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGAGCTGCTCAAGGGTCCACCGATGAGGTTTCGTCGATGCAGCTGGAATGCTTGTCCAACTTCCTAGCTGAATTATCTCTTTTGGAATACAGTATGCTATGCTACGCACCGTCGCTCGTAGCTGCATCGGCGATCTTCTTGGCGAAGTTCATACTTGTTCCAACCAAAAGACCATGGAACTCGACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGAGTGCGTTAAGGATTTACATCGCCTCTGCTGTAACGCCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTATTGCCCTCCGACGATACCGCCCGAGTTTTTCCAGACTCAAACACAGTAG 1491 45.34 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVVAVPPHLAKKRAPLGNLTNLKSVSHNAAKSSVPPAIMVPCATKAVKARKSSPARTRIANLPAAAHTATLIDVKTTNSIVPSNVPAISRTDATAVSSSMDVSPTKSDGVSLSLDETMSTCDSFKSPEVEYMDNTDVPAVDSVERKTKTSLCISGHPPIKGSICNRDALAEMETDSGIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDVNSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGSTDEVSSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILVPTKRPWNSTLQHYTHYQPSDLVECVKDLHRLCCNAHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQTQTQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3266992 3270297 - CmoCh15G006680.1 Cmo15g00668 398176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00668 496 CDD CYCLIN 260 349 IPR013763 -
Cmo15g00668 496 SUPERFAMILY Cyclin-like 220 356 IPR036915 -
Cmo15g00668 496 PANTHER CYCLIN-A1-1 34 494 - -
Cmo15g00668 496 PANTHER CYCLINS 34 494 IPR039361 -
Cmo15g00668 496 SMART Cyclin_C_2 359 483 IPR004367 -
Cmo15g00668 496 Gene3D - 230 479 - -
Cmo15g00668 496 PIRSF Cyclin_A_B_D_E 5 490 IPR039361 -
Cmo15g00668 496 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Cmo15g00668 496 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Cmo15g00668 496 SUPERFAMILY Cyclin-like 359 486 IPR036915 -
Cmo15g00668 496 Gene3D - 244 357 - -
Cmo15g00668 496 MobiDBLite consensus disorder prediction 1 32 - -
Cmo15g00668 496 SMART cyclin_7 266 350 IPR013763 -
Cmo15g00668 496 SMART cyclin_7 363 452 IPR013763 -
Cmo15g00668 496 CDD CYCLIN 357 451 IPR013763 -
Cmo15g00668 496 Pfam Cyclin, C-terminal domain 359 479 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02500 Cmo15g00668 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00083 Cmo-Chr4:447832 Cmo15g00668 Cmo-Chr15:3266992 1.57E-19 dispersed
Cmo04g01111 Cmo-Chr4:5661196 Cmo15g00668 Cmo-Chr15:3266992 5.38E-12 dispersed
Cmo05g00159 Cmo-Chr5:686871 Cmo15g00668 Cmo-Chr15:3266992 1.43E-99 dispersed
Cmo09g00266 Cmo-Chr9:1172689 Cmo15g00668 Cmo-Chr15:3266992 1.20E-104 dispersed
Cmo12g00256 Cmo-Chr12:1659706 Cmo15g00668 Cmo-Chr15:3266992 1.21E-92 dispersed
Cmo12g00518 Cmo-Chr12:3185191 Cmo15g00668 Cmo-Chr15:3266992 6.07E-105 dispersed
Cmo15g00668 Cmo-Chr15:3266992 Cmo17g00798 Cmo-Chr17:7649458 4.64E-106 dispersed
Cmo19g01144 Cmo-Chr19:9635668 Cmo15g00668 Cmo-Chr15:3266992 2.11E-53 dispersed
Cmo15g00668 Cmo-Chr15:3266992 Cmo04g02500 Cmo-Chr4:18395584 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00668 K06627 - csv:101221569 880.552