Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00669 ATGCCTTCATTGTCATTGAGACACCATCTAATGGCGAAGAGGCTCAGACCCACCCCACCCTCCACTCCCTCCGCCAAGCCATCGCCATCGCCACCGTCATTGCCGCCGTCTCCTCCGACCCCTCAACTCTTCCATTCAAAGCCCACCACCGTGTCCCTCCGCCACTCATCCAACGATCGAAACAAAACCCTAACCTACCTCGTATCCCCCGCATCCGCAGCATCCTCCAACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAGCCCCCTTCACTTCACCGGCGTTGTTGGGCCTCATCTTATCTCTCTCACCCATCTCCCAAATGGCGACGTTTCATACTGCCTTCACTCTTGTTCTACATCCTCCTCCTCCTCCTCCGCCGCCGCCGCCAGATTGGCCTTGCTTGATTTCCTTAACGCCGGTATCTCCCTAAGTGCCATTTGGGAGGTCTTCTCGGCGGCTGATCCAAGATTCGATTTCTTGTCGCGCCATTTGGAGGGGGCTCGAGTTCTCAGGCAAGACCCACTCGAGTGTTTGATTCAGTTTTTGTGTTCTTCAAATAACAATATTGGAAGAATCACCAAAATGGTGGATTACATCTCATCACTTGGGAATCATTTGGGTAATATTGGAGGCTTTGATTTCCATGAATTCCCCTCTTTGGAGAGGCTATCATTGGTCTCTGAGGCTGAGCTTAGAGAGGCAGGCTTTGGTTACAGGGCTAAATACATAATTGGCACTGTGAAAGAACTAAAAGGCAAACCTGGGGGAGGTGCAGAATGGCTTCTGTCTCTTCGTGATTTGGCTCTCGAAGAAGTGATAGAAGGCCTTACAGCTTTACCGGGCGTGGGTCCAAAGGTAGCAGCTTGTGTTGCTCTCTTCTCTCTCGATCAGCACCATGCCATTCCTGTTGACACACACGTCTGGCAGATTGCTACTAGGTACCTTGTCCCTGAGCTTGCTGGTGCACGTCTAACGCCAAAGCTTTGCAATCGTGTGGCTGAGGCATTTGTCAGCAAGTATGGAAAATATGCTGGTTGGGCTCAAACTCTGCTCTTCGTCGCTGATTTGCCTCAACAGAAGGCCCTCTTACCTGCAAGCCTTGAGAATACCAAAAGGAAAAAATCTACAAAGGAGCAGAGAGAAAAGGCACATACTGAGCAAGATCCATAG 1227 50.86 MPSLSLRHHLMAKRLRPTPPSTPSAKPSPSPPSLPPSPPTPQLFHSKPTTVSLRHSSNDRNKTLTYLVSPASAASSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTSPLHFTGVVGPHLISLTHLPNGDVSYCLHSCSTSSSSSSAAAARLALLDFLNAGISLSAIWEVFSAADPRFDFLSRHLEGARVLRQDPLECLIQFLCSSNNNIGRITKMVDYISSLGNHLGNIGGFDFHEFPSLERLSLVSEAELREAGFGYRAKYIIGTVKELKGKPGGGAEWLLSLRDLALEEVIEGLTALPGVGPKVAACVALFSLDQHHAIPVDTHVWQIATRYLVPELAGARLTPKLCNRVAEAFVSKYGKYAGWAQTLLFVADLPQQKALLPASLENTKRKKSTKEQREKAHTEQDP 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3273761 3277119 + CmoCh15G006690.1 Cmo15g00669 398177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00669 408 MobiDBLite consensus disorder prediction 1 57 - -
Cmo15g00669 408 Pfam HhH-GPD superfamily base excision DNA repair protein 198 333 IPR003265 GO:0006284
Cmo15g00669 408 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 76 401 - -
Cmo15g00669 408 Coils Coil 386 406 - -
Cmo15g00669 408 SUPERFAMILY DNA-glycosylase 192 374 IPR011257 GO:0003824|GO:0006281
Cmo15g00669 408 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 80 197 IPR012904 GO:0003684|GO:0006289|GO:0008534
Cmo15g00669 408 Gene3D - 169 375 IPR023170 -
Cmo15g00669 408 SUPERFAMILY TATA-box binding protein-like 75 191 - -
Cmo15g00669 408 MobiDBLite consensus disorder prediction 389 408 - -
Cmo15g00669 408 SMART endo3end 202 375 IPR003265 GO:0006284
Cmo15g00669 408 MobiDBLite consensus disorder prediction 20 43 - -
Cmo15g00669 408 MobiDBLite consensus disorder prediction 384 408 - -
Cmo15g00669 408 CDD ENDO3c 195 371 IPR003265 GO:0006284
Cmo15g00669 408 Gene3D Hypothetical protein; domain 2 192 316 - -
Cmo15g00669 408 Gene3D - 68 155 - -
Cmo15g00669 408 PANTHER N-GLYCOSYLASE/DNA LYASE 76 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00669 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] - csv:101219118 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00669 Cmo-Chr15:3273761 Cmo18g00115 Cmo-Chr18:816160 1.85E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00669 Cmo_Chr15 FPKM 37.600929 36.642555 14.544815 14.989388 3.438916 3.624081 3.523896 56.217106 55.008583 54.115883