Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00675 ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCGGTCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACGAAAGATGCACAGTTTGCTTTGCGTCGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATTTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGGTTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACCCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAG 1092 45.05 MSEAIAVMDIDDDNGNNEDEKSVEGKNVAGPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3298109 3304306 - CmoCh15G006750.1 Cmo15g00675 398183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00675 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 359 - -
Cmo15g00675 363 Gene3D - 36 198 IPR027417 -
Cmo15g00675 363 CDD AAA 60 198 - -
Cmo15g00675 363 Gene3D - 201 263 - -
Cmo15g00675 363 CDD HLD_clamp_RFC 199 261 - -
Cmo15g00675 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Cmo15g00675 363 Gene3D - 264 361 - -
Cmo15g00675 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Cmo15g00675 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Cmo15g00675 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 359 - -
Cmo15g00675 363 MobiDBLite consensus disorder prediction 1 39 - -
Cmo15g00675 363 SMART AAA_5 72 203 IPR003593 -
Cmo15g00675 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02487 Cmo15g00675 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01267 Cmo-Chr6:9554205 Cmo15g00675 Cmo-Chr15:3298109 2.59E-10 dispersed
Cmo15g00675 Cmo-Chr15:3298109 Cmo16g00815 Cmo-Chr16:4217683 4.61E-11 dispersed
Cmo01g01421 Cmo-Chr1:11145632 Cmo15g00675 Cmo-Chr15:3298109 9.18E-62 transposed
Cmo03g00225 Cmo-Chr3:3512963 Cmo15g00675 Cmo-Chr15:3298109 5.01E-30 transposed
Cmo06g01192 Cmo-Chr6:9081038 Cmo15g00675 Cmo-Chr15:3298109 8.62E-08 transposed
Cmo07g00479 Cmo-Chr7:2183312 Cmo15g00675 Cmo-Chr15:3298109 2.27E-15 transposed
Cmo16g01059 Cmo-Chr16:7436229 Cmo15g00675 Cmo-Chr15:3298109 1.30E-66 transposed
Cmo15g00675 Cmo-Chr15:3298109 Cmo04g02487 Cmo-Chr4:18328007 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00675 K10756 - csv:101217230 673.315