Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00677 ATGGCGTCGTCGACGAGCATTTCTAGATCTCAACGACCTTCTAACATCTCGCCATTCCGCTCACGGAAATCTCCTGCGGCTTCGCCGGCGCCCAGGCCGAATGGACGGCCTACGACTCCTTCTTCCACGGCGTCTTCAAGGCCTCCTTCGAAGGTTTCGGTTTCTCCGATGACAACTGCTAGTTGTACACCGAGCCCTCCCACTCCCGCACTTGACCGTCCCGATGTCATCAAGGCCAAAGAAAATGTGACGGTCACGGTTAGGTTCAGACCTCTAAGGTATTGTTTGCTTCTTTTGAGCATATTATTTGAAGAAATGTGGACCGATTTTGGCGGAATTGGTCGTCTTCGAACTGTTGACGATACTTGGAAGCTTACTATCTCTCTTTCTCTCTCTCTCTCTTCCTCTTTCGTTTTGACTTGGAGCAGTGTTAGAGAGCTTAACAAAGGAGATGAAATAGCTTGGTATGCTGACGGAGAGTGCACAGTGAGGAACGAATTCAACTCATCCATCGCTTATGGATTTGATAGAGTTTTTGGTCCAGCGACAACGACTCGTCATGTATACGATGTTGCTGCTCAGCAAGTTGTTGCCGGTGCAATGAACGGAATTAATGGTACTGTTTTTGCATATGGTGTCACTAGCAGTGGTAAGACTCATACCATGCATGGAGAGCAAAAGTCACCCGGAGTTATCCCACTAGCAGTGAAAGATGTATTTGGAATTATTCAAGAGACACCTGAGCGGCAGTTTCTTCTTCGTGTTTCATATCTAGAGATCTACAACGAGGTCATCAATGATTTACTTGATCCAACAGGTCAGAACCTACGAGTACGAGAGGATGCTCAGGGAACTTATGTTGAGGGCATCAAAGAAGAAGTTGTTTTGTCCCCCGCTCATGCTCTTTCCTTGATAGCATCAGGAGAAGAGCATCGGCATGTGGGATCTAATAATTTCAATCTACTTAGCAGTCGAAGTCACACCATATTCACTTTGACCATTGAAAGTAGCCCACATGGGGAGCATCATGACGAAGAAGATGTGACATTGTCCCAACTGCACTTAATTGATCTTGCAGGATCTGAAAGTTCAAAAACAGAAACAACTGGTTTACGGAGAAAAGAGGGTTCGTACATCAACAAGAGCTTACTGACTCTGGGCACTATAATAGATGAGAAATCTCTCATCAAAAAGTATCAGAGGGAAATTTCCAGTTTAAAGCTGGAGCTTCAGCAATTAAGGCGTGGCATAATGGAGAATCCTAGTTCAACTGCATTGTCTACACAGGAAGATTTTGTCAATTTGAAGCTTCAGCTGGAAGCTGATCAGGTTAAATTGCAATCAAGATTGGAAGAGGAAGAGGAAGCAAAGGCTGCTTTGATGGGGAGAATTCAAAGGTTGACAAAACTAATCCTAGTTTCTACTAAAAATTCTTTGCCATCAAGTGTCGCCGAAAAGCCAGGACAAAGAAGGAGGCATTCTTTTGGTGAAGATGAGGACAAACAGTACCTGCTGGCATATTTGCCTGATAGAAAACGAGACTACTTGAATGATGATGATGGCGGGAGCTGTGCTTCAGGGGTTTCAGTGGATGGAAAAGATGATGTTAAGCCTGAGAATGCTATTGGACCATCATCAACTACTGATAATGAGAGTTCTGCTGGTGAATCACCTGCCTCTCGTTCAAAAGCTTCTCAAAATCGGATGACACCTGATGAATTGAAGAATGGAAGGAGGAAATCAATTTGCAGAAAGGGAGATGATTCTTCAATTATTTACTCATCCCAAGAGAGAACGCAAGCAGGTGACTTATTTGGTGCAACTATGGATGGCCACCGTCTGCCTCCGAAAACAAGGACTTTCAAGGTTCTAGAGACTGGGACTACTCTTACGGACCAGATGGATCTCCTTTGTGAGCAAGTCAAGATGTTGGCTGGGGAGGTTGCCTTGTGTACTAGTTCACTGAAAAGACTGTCAGAGCAAGCAGCCAAGAACCCTGAAGATTCCCATATCAAGGAACATGTGCAAAAGTTGAAGGATGAAATTAGTGAAAAGAAGCTCCAGATACGTGTATTGGAGCAACGTATGATTGGATCCGTTGAATTGTCGCCACAAATGTCAAGTAGCATTGAACTGAATCAGGCCTTAGCAAAGCTCACTTCTCAACTTAATGAAAAAATTTTCGAACTTGAGACAGCAGAAAATGCGGAGTTGCAAGAGGCAATTCTAAGGGCGCAACAAGAGTCATCATCCAATTCTCAGCCAAATGAAGATAATGAGGCTTCTCAGCATCTTCCAAACTACTCTGTACGGACGAAGGTCGAAGTACGGCATAAATACAGCCCATGGGAAGATAAATACGCCGAAGAAAACACCCCGACTAGTGTCATGAGCTTGAATAGAGTTTTGACCCTGGACGACTCCACAGATTGCAACAGTGACAAGTTTTGTCATTCCCAAGTTATGCAGGCTGAGATAGAAACTTTGAAGCAAGAGAGGGTGAGACTGATTGAAGAAAAGGAAGGTCTTGAGATTCAGAGTCGTAAACTAGCAGAAGAAGCCTCATATGCAAAGGAATTAGCTTCAGCTGCTGCAATTGAGCTCCAAAACTTAGCTGAAGAAGTGACCAAACTTTCTTATGAAAATGCCAAACTTGCTGGTGACCTTACAAATACTAAGGACACTTACTGCAGATCATGCTGTGCACAAAGGTCTTATGATTCAAAGCACCATATTGGTAATTCTAGATATCAAAGGGAAGCTGCACTTGAAAAGGCCATATTTGACAGAGACCAAAGAGAAGTTGAGCTATATCGAAGACTCGAAGAGGCGAAACGCCACGAAGAAGATATGGAAAATGAACTAGCAAATATGTGGGGGCTATTTGCTAAAATGAGGAAGTCCGAACTCAACATTGAGGATATGTCCTTCGAGGGAGTTCGTCCATCCTACCTTTTACAAGGCCGAGCTAAAAATGGATGCATCTCGTCTAATGGCCTCTCTAATAGACCGTCCGAAGACGACGCCATACACGTCGATGAAATGAGAGGAGCTGGCTATAAGAAGGAGAGGATCAGATGTAGTAGCAGAGATCTGGAAAGTTGGAAGGTATGA 3114 44.03 MASSTSISRSQRPSNISPFRSRKSPAASPAPRPNGRPTTPSSTASSRPPSKVSVSPMTTASCTPSPPTPALDRPDVIKAKENVTVTVRFRPLRYCLLLLSILFEEMWTDFGGIGRLRTVDDTWKLTISLSLSLSSSFVLTWSSVRELNKGDEIAWYADGECTVRNEFNSSIAYGFDRVFGPATTTRHVYDVAAQQVVAGAMNGINGTVFAYGVTSSGKTHTMHGEQKSPGVIPLAVKDVFGIIQETPERQFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPAHALSLIASGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPHGEHHDEEDVTLSQLHLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTIIDEKSLIKKYQREISSLKLELQQLRRGIMENPSSTALSTQEDFVNLKLQLEADQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKNSLPSSVAEKPGQRRRHSFGEDEDKQYLLAYLPDRKRDYLNDDDGGSCASGVSVDGKDDVKPENAIGPSSTTDNESSAGESPASRSKASQNRMTPDELKNGRRKSICRKGDDSSIIYSSQERTQAGDLFGATMDGHRLPPKTRTFKVLETGTTLTDQMDLLCEQVKMLAGEVALCTSSLKRLSEQAAKNPEDSHIKEHVQKLKDEISEKKLQIRVLEQRMIGSVELSPQMSSSIELNQALAKLTSQLNEKIFELETAENAELQEAILRAQQESSSNSQPNEDNEASQHLPNYSVRTKVEVRHKYSPWEDKYAEENTPTSVMSLNRVLTLDDSTDCNSDKFCHSQVMQAEIETLKQERVRLIEEKEGLEIQSRKLAEEASYAKELASAAAIELQNLAEEVTKLSYENAKLAGDLTNTKDTYCRSCCAQRSYDSKHHIGNSRYQREAALEKAIFDRDQREVELYRRLEEAKRHEEDMENELANMWGLFAKMRKSELNIEDMSFEGVRPSYLLQGRAKNGCISSNGLSNRPSEDDAIHVDEMRGAGYKKERIRCSSRDLESWKV 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3309294 3321027 + CmoCh15G006770.1 Cmo15g00677 398185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00677 1037 Coils Coil 716 748 - -
Cmo15g00677 1037 PANTHER CENTROMERE PROTEIN E 389 1029 - -
Cmo15g00677 1037 PANTHER CENTROMERE PROTEIN E 143 390 - -
Cmo15g00677 1037 Coils Coil 934 954 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 541 571 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 37 66 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 745 769 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 572 586 - -
Cmo15g00677 1037 Coils Coil 819 853 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 518 591 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 478 497 - -
Cmo15g00677 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 398 IPR027417 -
Cmo15g00677 1037 ProSitePatterns Kinesin motor domain signature. 351 362 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo15g00677 1037 Gene3D Kinesin motor domain 141 467 IPR036961 -
Cmo15g00677 1037 Coils Coil 436 470 - -
Cmo15g00677 1037 SMART kinesin_4 80 421 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 Coils Coil 389 416 - -
Cmo15g00677 1037 ProSiteProfiles Kinesin motor domain profile. 82 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 1 73 - -
Cmo15g00677 1037 PRINTS Kinesin heavy chain signature 203 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 PRINTS Kinesin heavy chain signature 352 370 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 Coils Coil 675 695 - -
Cmo15g00677 1037 MobiDBLite consensus disorder prediction 1 22 - -
Cmo15g00677 1037 Pfam Kinesin motor domain 162 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g00677 1037 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 389 1029 - -
Cmo15g00677 1037 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 143 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00677 K11498 CENPE; centromeric protein E - csv:101218642 1053.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00373 Cmo-Chr2:1907048 Cmo15g00677 Cmo-Chr15:3309294 2.95E-11 dispersed
Cmo07g01319 Cmo-Chr7:7390463 Cmo15g00677 Cmo-Chr15:3309294 9.64E-75 dispersed
Cmo15g00677 Cmo-Chr15:3309294 Cmo20g00824 Cmo-Chr20:4083837 2.76E-28 dispersed
Cmo15g00677 Cmo-Chr15:3309294 Cmo03g00133 Cmo-Chr3:1786496 9.67E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g245 . Blo12g00619 . . . Bpe04g00538 . . . Cmo15g00677 . . . . . . . Bhi04g01895 . . . . . Lcy10g1236 Cla08g00606 Cam08g1019 Cec08g0609 Cco08g0720 Clacu08g0730 . Cre08g0538 . . . Cone20ag0437 . . . Cme03g00530 Blo17g00172 . . . . Bpe14g00387 . Bma02g00214 . . . . . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g00445 . Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010749 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00677 Cmo_Chr15 FPKM 7.879693 9.834337 16.039753 13.337217 9.694923 9.607566 7.82872 17.834343 18.690145 21.061737