Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00678 ATGGCCGATCTTTTGTCCCTACAACTGACACTTCCATCGCCTTCAGTTCCATTTACTGCTTCGAAGCACAAAATGTCAACCAAATCCATGGCTGCTTCTGTTTTTGGAAGCGCCGCCACTGTCGCCGCCGCCTCATCAACCACTCGTTTCCTCTCCTCAGCCGCCAGAGCTACACTATCTTTCTCTTCACGTTCATCATCACTCCTTTCTCGCTCCTCGTCTTCGTCGTCTCTCAAGTCTCTCAGATCGTCTCCTTCCATTTCTCATCTTTTTCTGAATCAGGGGAGACCGAGTTCTCGTGTATCCAACAGAGGATTCAGTGCGGCGTCTAATCCGAAATGCCTGGCATCGGATCCTGAGCAGTTGAAGAATGCTAGAGAAGATATCAAGCAGCTCCTGAAGACCACATTCTGCCATCCTATTTTGGTACGCCTAGGTTGGCATGATGCTGGAACTTACAATAAAGATATTGAGGATTGGCCACAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAACTGGGACATGGTGCTAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAACCTATCAAAAAGAAGTATTCTAACGTGACATATGCAGACCTATTTCAGTTGGCTAGTGCTACAGCTATCGAGGAGGCTGGGGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTGGGGCCAGAGCAATGCCCTGAAGAGGGAAGGCTTCCTGATGCTGGTCCTCCGTCACCTGCTGCACATCTACGAGACGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCCGGGGCACACACCTTAGGGAGATCTAGACCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACCTGGTGCACCCGGTGGGCAATCCTGGACTGCACAATGGTTGAAGTTTGACAACTCGTATTTTAAGGATATCAAAGAAAGGACAGATCAAGAATTACTGGTGTTGCCAACTGATGCTGTTCTCTTTGAAGATCCATCATTCAAGGTTTATGCTGAAAAATATGTTGAAGACCAAGAAGCATTCTTCAAAGACTATGCGGAAGCCCATGCTAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCAGAGGGTATTGTGATTGATGATGCATCTTCGACACCTGCATGA 1188 46.97 MADLLSLQLTLPSPSVPFTASKHKMSTKSMAASVFGSAATVAAASSTTRFLSSAARATLSFSSRSSSLLSRSSSSSSLKSLRSSPSISHLFLNQGRPSSRVSNRGFSAASNPKCLASDPEQLKNAREDIKQLLKTTFCHPILVRLGWHDAGTYNKDIEDWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLRDVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERTDQELLVLPTDAVLFEDPSFKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDASSTPA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3322128 3328380 + CmoCh15G006780.1 Cmo15g00678 398186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00678 395 SUPERFAMILY Heme-dependent peroxidases 119 378 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Haem peroxidase superfamily signature 139 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Haem peroxidase superfamily signature 201 218 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Haem peroxidase superfamily signature 219 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Haem peroxidase superfamily signature 269 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Haem peroxidase superfamily signature 309 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 MobiDBLite consensus disorder prediction 277 305 - -
Cmo15g00678 395 PRINTS Plant ascorbate peroxidase signature 139 154 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Plant ascorbate peroxidase signature 200 218 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Plant ascorbate peroxidase signature 219 231 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PRINTS Plant ascorbate peroxidase signature 338 362 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 Gene3D Peroxidase, domain 2 247 370 - -
Cmo15g00678 395 Gene3D - 125 378 - -
Cmo15g00678 395 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 36 388 - -
Cmo15g00678 395 CDD ascorbate_peroxidase 116 380 - -
Cmo15g00678 395 ProSitePatterns Peroxidases proximal heme-ligand signature. 269 279 IPR019793 -
Cmo15g00678 395 Pfam Peroxidase 126 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo15g00678 395 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 36 388 IPR044831 GO:0004601|GO:0034599
Cmo15g00678 395 ProSiteProfiles Plant heme peroxidase family profile. 142 394 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00678 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216755 634.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02484 Cmo15g00678 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00678 Cmo-Chr15:3322128 Cmo19g00742 Cmo-Chr19:7621692 3.15E-77 dispersed
Cmo15g00678 Cmo-Chr15:3322128 Cmo04g02484 Cmo-Chr4:18312507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00678 Cmo_Chr15 FPKM 6.559258 8.562437 5.65918 6.493836 9.815926 10.246028 9.202239 33.577686 33.338284 30.218794