Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00681 ATGACAGATTACTGCATGCCTGGAATGAGTGGCTATGATCTACTCAAACGACTCAAGGGATCTTACTGGAAAGACATTCCTGTTGTTGTCATGTCATCAGAGAACGAGCCTTCAAGAATCAACATGTGTTTGGAAGAAGGGGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTTTCCGACGTGAAGAAGCTCGAGCCTCACCTTCAAAAGTCCCTCACTCGCTGTTCTGCAGAAATAAAGGAACAAGAAACCGTTGGATTTGGAATTGAAATCGGAATCGGAATCGGAATCACTGATTCCGATGTCGTCGACGACGGAAACAACTCAGATAGTAACAAGAACGACAATGGCGATCTGAAAGGCGACCGAAGCTGA 375 45.33 MTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSAEIKEQETVGFGIEIGIGIGITDSDVVDDGNNSDSNKNDNGDLKGDRS 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3335966 3337293 - CmoCh15G006810.1 Cmo15g00681 398189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00681 124 Gene3D - 1 88 - -
Cmo15g00681 124 Pfam Response regulator receiver domain 2 62 IPR001789 GO:0000160
Cmo15g00681 124 ProSiteProfiles Response regulatory domain profile. 1 69 IPR001789 GO:0000160
Cmo15g00681 124 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 1 109 - -
Cmo15g00681 124 SUPERFAMILY CheY-like 2 63 IPR011006 -
Cmo15g00681 124 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 109 IPR045279 GO:0009736
Cmo15g00681 124 MobiDBLite consensus disorder prediction 100 124 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02481 Cmo15g00681 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00681 Cmo-Chr15:3335966 Cmo07g01403 Cmo-Chr7:8052325 5.12E-33 dispersed
Cmo15g00681 Cmo-Chr15:3335966 Cmo04g02481 Cmo-Chr4:18300167 1.37E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11158 PF00072 Response_reg 1.70E-12 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00681 K14492 - cpep:111808385 188.734