Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00692 ATGGATAGAAGAAAATGGCCATGGAAGAAGAAGTCGTCATCTGATAAAAGTCCTGGACAAACCGAAAGTTCTGGATCAATGTCGATGTATTCCGAGAGGTTTTCTGACGAGCAGGACGCAGTCAAGTCGTCGCCTAATCACGAGATTCAGTCACCAGAAGTAACGTCAAAAGCAGTATGTGATGAAGACATTGATGATGATTCACCAAAACCAGAAGAGCTCAATAATAGTGTGGAAGGTCTATCTGATAGGTTATCAGCTGCTCTTTTAAATTTGAAGGCCAAAGAGGACTTAGTAAACCAGCATGCCAAAGTTGCTGAAGAAGCTATCGCAGGATGGGAAAATGCGGAAAATGAAGTTGGACTACTAAAACAGCAGCTTGGGACTACGGTTCAGCAAAAGTCTGCATTGGAAGATCGAGTGAGCCACCTTGATGGGGCGCTCAAAGAATGTGTTAGGCAGCTCAGGCTGGCAAGGGAGGAGCAGGAGCAGAAGATTCGCGACACGGTGGAAGAAAAAACCCGAGATTGGGAGTCCACCAAGGTGAACCTTGAGAGGCAGCTCCTCGAGCTCGAGCGCAAAGCGGATGAGGCTAAATGTGAATCTCCTCAAAACGATCCTAGCCTTGACAAGATGCTCGAGTCATTAAAAAGGGAGAATGCAGCCCTCAGGTATGAGCTTCATGCTCAATATAGGGAGTTAGAAACCAGGACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCTGTAAGCAACATCTTGAGAGCATAAAGAAAATGGCGAAGCTTGAAGCCGAGTGTCGCCGGTTGAAAGTAATGTCATACAAACCATCATTGGTTTATGATCACAAATTAGCTGCTTCGACGACTATTTCTATCGAGTCACTTACCGACACTCAATCGGATAACGGAGAGCAGCTTAATGGCGTGGATATGGATATAAGAAGAACCGAACGAAACAAATGTGTAGCTAGTTGCTCAGACTCATGGTCATCAAACTTACTTGTTAGCAGTAATCTTCCTTCGTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAAAGGCTTGCATCATTACCCGAAACTTCTATAAGAGAGAGTCATCAAGAACCCGAAGCTTCTGCTCGTCCTACTGCTGAAGAAAATGCCATAAGAACCAAGCTCGAGACGTTGCGGCATGAGAGATCTGTAATGGAAGAGAAGCTGGTTGAGATGGAAGAAGCAAAGATTGAATTGGAAGCGAAGCTGAAACAGATAGAATTGGAGAAGGATGAAATGGAAGAGAGGCTAGAGATGATGGAAACGGAGAGAGCTGAAGTCGATGAAATGGTAGCAATGATGGAGAGCGAGATATCCGAATCGAGGCGAAAGTTAGCGACAATGGAATCAGAGAAAGCTGAAATGAGAGAGAAATTAATGAAGTTGGAGGCAGAGAAAGATGAACTGAGGAGTGCTCTTTCTCAGAGTCAGAACTCTGTTGACATTTCACAATTTCAATTCAAGGAAACTGAGATGAAACTGGAGAAGTTGCAGAATGAGTTAACCTTTGCAAATGAATCAAAGTTGAGAATTGAGTCTCAACTTATCAGCATGGAAGCTGAATCTCTGACCATGAATGCAAAAGTTGGGATGTTGGAATCTGATATTCAAAAAGAGAGGGCTTCAGCATTGGCATTGACAGTCAAGTGTCAGGGACTAGAAGAAGAGCTTTCAAGATTGAAACATGATGAACAACTATCACAAACTGAAATCTCCAAACATGAGTTGAAGATAAATCAGGAGGATCTAGCTGTAGCTGCAGGGAAACTTGCAGAGTGTCAAAAGACAATTGCTTCTCTTGGGAATCAGCTTAAATCTCTAGCATCTCTCGAAGATTTTCTGATCGATACGACGCAACTACCGGAGTTCACAGATGGCGAGGAGCATTGCAAGCATTCGAACGGGACACTTTCACCCAGAAGAGATTCAGACTATACTAAAGGAGTTGATGACAGTTCTGAACCATCATTGAATAAGAACGAAGACGACTCACCCCCATTTTCATCTTCTTCAACTTCATCGTCCGTGATTGTAAGTCATATCGTCAATTCTGAGAAAAACCGAAACGGTTTTGCTAAGTTTTTCTCTCGAACCAAGGGCGGGATAAAACTAGAAATTTAG 2172 43.23 MDRRKWPWKKKSSSDKSPGQTESSGSMSMYSERFSDEQDAVKSSPNHEIQSPEVTSKAVCDEDIDDDSPKPEELNNSVEGLSDRLSAALLNLKAKEDLVNQHAKVAEEAIAGWENAENEVGLLKQQLGTTVQQKSALEDRVSHLDGALKECVRQLRLAREEQEQKIRDTVEEKTRDWESTKVNLERQLLELERKADEAKCESPQNDPSLDKMLESLKRENAALRYELHAQYRELETRTIERDLSTQTAETACKQHLESIKKMAKLEAECRRLKVMSYKPSLVYDHKLAASTTISIESLTDTQSDNGEQLNGVDMDIRRTERNKCVASCSDSWSSNLLVSSNLPSSLELDLMDDFLEMERLASLPETSIRESHQEPEASARPTAEENAIRTKLETLRHERSVMEEKLVEMEEAKIELEAKLKQIELEKDEMEERLEMMETERAEVDEMVAMMESEISESRRKLATMESEKAEMREKLMKLEAEKDELRSALSQSQNSVDISQFQFKETEMKLEKLQNELTFANESKLRIESQLISMEAESLTMNAKVGMLESDIQKERASALALTVKCQGLEEELSRLKHDEQLSQTEISKHELKINQEDLAVAAGKLAECQKTIASLGNQLKSLASLEDFLIDTTQLPEFTDGEEHCKHSNGTLSPRRDSDYTKGVDDSSEPSLNKNEDDSPPFSSSSTSSSVIVSHIVNSEKNRNGFAKFFSRTKGGIKLEI 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3375209 3380334 - CmoCh15G006920.1 Cmo15g00692 398200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00692 723 MobiDBLite consensus disorder prediction 1 79 - -
Cmo15g00692 723 Coils Coil 392 531 - -
Cmo15g00692 723 SUPERFAMILY Tropomyosin 387 607 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 1 16 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 642 691 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 365 386 - -
Cmo15g00692 723 Coils Coil 560 587 - -
Cmo15g00692 723 Pfam Filament-like plant protein, long coiled-coil 95 202 IPR008587 -
Cmo15g00692 723 Pfam Filament-like plant protein, long coiled-coil 208 275 IPR008587 -
Cmo15g00692 723 Pfam Filament-like plant protein, long coiled-coil 470 626 IPR008587 -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 365 379 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 522 722 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 429 525 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 1 467 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 642 675 - -
Cmo15g00692 723 Coils Coil 213 233 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 17 33 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 429 525 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 467 - -
Cmo15g00692 723 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 522 722 - -
Cmo15g00692 723 MobiDBLite consensus disorder prediction 676 691 - -
Cmo15g00692 723 Coils Coil 152 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00692 - - - csv:101206243 1008.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00111 Cmo15g00692 CCT
Cmo01g02021 Cmo15g00692 CCT
Cmo01g02021 Cmo15g00692 ECH
Cmo09g00111 Cmo15g00692 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00692 Cmo-Chr15:3375209 Cmo20g01014 Cmo-Chr20:6558503 6.91E-34 dispersed
Cmo15g00692 Cmo-Chr15:3375209 Cmo04g02471 Cmo-Chr4:18255211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
Vvi18g1082 Blo01g01590 Blo12g00890 Bda01g00496 Bda03g00283 Bpe02g00358 Bpe04g00239 Bma04g00240 Bma01g02360 . Cmo15g00692 Cma01g01963 Cma09g00113 Car01g01534 . . Cpe06g00076 Cpe13g00617 . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 Cone4ag1962 Cone7ag1876 . . Lsi04g01729 Csa03g04266 Chy04g00430 . . . . . . . . . Sed01g2501 Cmo01g02021 Cmo09g00111 . . . Car09g00102 . Cpe02g00080 Bhi09g02102 Tan01g5000 . . Hepe01g1627 Mch11g0131 . Cla05g01887 Cam05g2020 Cec05g2031 Cco05g2087 Clacu05g2011 Cmu05g1892 Cre05g2017 Lsi08g00434 . . Cme04g00482
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00692 Cmo_Chr15 FPKM 8.139951 7.869468 12.814187 13.04702 1.611199 1.441423 1.340414 4.194084 3.871113 4.580019