Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00693 ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGATAGATTTCGCTTCTATTTTCACTCCAACGCTTAGACCTAACGCCCAAGTTACTCGCCTCCTTTTCAATCCTTCGCCTCCGCATTCCGTTTCCTTGCCGGCGCGTGGATTTACGACTCTTGCAGCTTTTAAATCCAGAACCAAAGTGCCGCCGAAGAAGGTTTCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGATTGGAACGCGCCGTCATCCCTCCCGGGAAGAGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTATTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTCTGAATCCTGGAACTGGAAAGTTCGTCACCGACGAGGAAGATGATGATTGA 813 51.41 MAAQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAAFKSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3384093 3385642 + CmoCh15G006930.1 Cmo15g00693 398201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00693 270 Pfam Chlorophyll A-B binding protein 85 214 IPR022796 -
Cmo15g00693 270 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 3 181 - -
Cmo15g00693 270 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 192 255 - -
Cmo15g00693 270 SUPERFAMILY Chlorophyll a-b binding protein 64 248 - -
Cmo15g00693 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 3 181 - -
Cmo15g00693 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 192 255 - -
Cmo15g00693 270 Gene3D Chlorophyll a/b binding protein domain 32 130 - -
Cmo15g00693 270 Gene3D Chlorophyll a/b binding protein domain 131 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00693 K03542 psbS; photosystem II 22kDa protein - csv:101206477 429.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02002 Cmo15g00693 CCT
Cmo04g02470 Cmo15g00693 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00693 Cmo-Chr15:3384093 Cmo04g02470 Cmo-Chr4:18247639 3.90E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g264 Blo01g01295 . . . Bpe02g00643 . . Bma01g02070 Cmo04g02470 Cmo15g00693 . . . . Sed01g3127 . . Bhi04g01917 Tan11g1281 Cmetu03g0812 . Hepe02g2274 . Lcy10g1223 Cla08g00587 Cam08g1002 Cec08g0591 Cco08g0701 Clacu08g0711 . Cre08g0522 Cone4ag1409 Cone7ag1531 . . . . . Cme03g00563 . . . . . . . . . . . . . Car04g02287 Car15g00626 Cpe01g02049 . . . . . . . . . . . . . . . Lsi08g00433 . Chy03g00803 .
Vvi18g1036 . . . . . . . . . Cmo15g00693 Cma01g01940 . Car01g01516 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04252 Chy04g00444 . . . . . . . . . . Cmo01g02002 . . . . . . Cpe02g00097 . . . . . . . Cla05g01901 Cam05g2037 Cec05g2045 Cco05g2101 Clacu05g2029 Cmu05g1909 Cre05g2031 . . . Cme04g00497
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009327 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00693 Cmo_Chr15 FPKM 13.611479 15.617474 9.663293 10.351068 9.271188 9.253924 9.88408 6.394471 6.348567 7.055592