Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00703 ATGACGTGGCTTGTAGAGAATCGGTGCGAGTCGCAGAAGAGCAAAATGGCGGAGGAATTACAGGACAACGATGCTCCGAATGAAGAGGCCATGGATGTAGATGTTGGTATAGAGACGAAGATTCAGAACGCTATGCTCTCTCGCGTCTCTCACTTCAAGGAACAAGCCGACTCTTTAACTTTTGAGGGGGTTAGAAGATTGTTAGAAAAGGACTTGTGTATGGAGACGTACGCTTTAGATGTGCATAAAAGATACATCAAGCAGTGTTTGGTGAAGTGCTTAGAAGGTGTGGAGGAAGACAATGCCTCAAAGTCTTCTGAGGAGACTGGGGGGAAAAGTGTGAGTAGAGGAGAAGCTGCTGAGTCACTTGAAGGGCATCAGTCCAAGAAAGGTGCAAAGGAACCTTGCTTGGAAGATGAGGAGAAAATGGAAGACTCTCCAGTTATGGGCCTTCTCGCAGGACATAAAACAAAAAATGTTGAATCTGACAAAATCAAAGGAATCAAAGACAAAGATGACAAAGATATTCCTACTGAGAGTACAATTAAGAAAGCTATTAGAAAAAGAACTCCTTATCTTAAAGCTAATTCGGAGAAAGTTACTATGGCTGGAGTTCGCCGCCTTCTTGAGGATGACCTTAAACTTACTAAATATGCTCTCGATGGTTGTAAGAAGTTTATAAGCCAACAAGTAGAGGAGATATTGAATTCTTGTGAAGCTGCTGAGGAAGTGTCTAATGAAAAGAAAGGTTCTCGTTTGAAAACTCCCAAAAAGGTAAGCAAAGAAAGCTCTCATTCTACAGAAGGGGGGAGCAGCAGTGAGGAGGAAAGCGATGAAGTAAAGCCTGTAAAGAAAAATGTAACTAAAGGAAGAATATCAAACTCTAATGAAACGAAAAAGCGGAAAAGATCTACAAAGGAGATTGTCTCTGCCAAGAAGCAAAGAAAGCATGTCCAGCACACATCGGAGGAGGATAGTGATGAAGAAGGTGGTGAGAATGTCTCTGAAGATGGCCATTCTGAATCATCCAATGAAAAACCTGTGAAGAAAGAAGTTTCAACTCCTGTCTATGGCAAGCGTGTGGAGCACTTGAAATCGGTTATCAAATCATGTGGGATGAGTGTTCCTCCATCAATTTATAAGAAAGTGAAGCAGGCACCTGAAAGCAAACGTGAATCACAACTTATAAAAGAGTTGGAGGGGATACTATCCAGAGAAGGATTGTCTGCTAATCCCACGGAAAAAGAAATTAAGGATGTCAAGAAGAAGAAGGAAAGGGCCAAAGAGCTTGAAGGCATTGACTTAAGTAACATTGTCTCAAGTTCTCGTAGAAGATCCACATCCAGTTATGTAGCACCACCTCCAAAACCAAAAATACCAGTTAAAACTGAAGGTGATGATGTTGATGATACTGATGATGAGGAGGAGGAGGATGATGATGATGATGATGATGAGGACGGCGAAGAGGAGGACGATGAAGAGGATAATGGTGATGTTGATGAAAGCCAAGGTGAAGAAGAATTCAATGAGGGTAACAAGCCATCAACTTTTAAAATAGACTTGCTGATTTTTGTATATCACATGATAATGAAGACAGTGATTGAAACCCAAAGGAGCATTCAAGATTCTCGCGTCTGGTCCTTGATCAGCGTAGCAACGAACCAGAGTAAACTTATTTTCTACGTAGTTTCCCTTTGTCTTTAG 1704 41.43 MTWLVENRCESQKSKMAEELQDNDAPNEEAMDVDVGIETKIQNAMLSRVSHFKEQADSLTFEGVRRLLEKDLCMETYALDVHKRYIKQCLVKCLEGVEEDNASKSSEETGGKSVSRGEAAESLEGHQSKKGAKEPCLEDEEKMEDSPVMGLLAGHKTKNVESDKIKGIKDKDDKDIPTESTIKKAIRKRTPYLKANSEKVTMAGVRRLLEDDLKLTKYALDGCKKFISQQVEEILNSCEAAEEVSNEKKGSRLKTPKKVSKESSHSTEGGSSSEEESDEVKPVKKNVTKGRISNSNETKKRKRSTKEIVSAKKQRKHVQHTSEEDSDEEGGENVSEDGHSESSNEKPVKKEVSTPVYGKRVEHLKSVIKSCGMSVPPSIYKKVKQAPESKRESQLIKELEGILSREGLSANPTEKEIKDVKKKKERAKELEGIDLSNIVSSSRRRSTSSYVAPPPKPKIPVKTEGDDVDDTDDEEEEDDDDDDDEDGEEEDDEEDNGDVDESQGEEEFNEGNKPSTFKIDLLIFVYHMIMKTVIETQRSIQDSRVWSLISVATNQSKLIFYVVSLCL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3416858 3423458 + CmoCh15G007030.1 Cmo15g00703 398211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00703 567 SMART CHZ_2 424 459 IPR019098 -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 100 142 - -
Cmo15g00703 567 PANTHER HIRA-INTERACTING PROTEIN 3 16 509 IPR037647 -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 435 449 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 239 357 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 411 432 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 407 513 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 122 142 - -
Cmo15g00703 567 Pfam Histone chaperone domain CHZ 425 454 IPR019098 -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 466 505 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 242 286 - -
Cmo15g00703 567 MobiDBLite consensus disorder prediction 333 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00703 - - - bhj:120075406 662.529
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00703 Cmo_Chr15 FPKM 18.31673 20.007328 14.655441 15.544174 7.608407 6.772206 6.532569 6.13622 6.355862 6.468358