Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00709 ATGAGGGGAGCTGTTGAGCAATCCACTCCAGAGAGGTACGATGATGGCGACAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGCCGATCTAAGCAGAACGCCTCTATTTCGACGTCAGTGTCTTGTAGTTCGGTCAATGGAATGCCGGGGGAAGCATCAGAGTGCAGGGAAAATGGTAAAATAAATGCTAACTTAACAGCACCCTCGAATCATTCTTCTTTGACACAACAAGCTCATGAATCCAATCATCCGATAGAGCATGGTGTGACCAGAAGAAATAAGATTGCGTTTAGTTCTTTGCCCCCTCTGCATATTAGCGAACAAGCTGAATTATCTGAGTCACAAAATTTGATAAATGAAAATCTTCATCCATTGGATGCTGGTGGAAAGACTATAAAATCATGTCCTGAACAGATTGTTTGTGGAAGGATGCCTGGGATATCTATAAATCAGCACTCCCCTCCTGCTGATGTAACTGAAAATAACACGCAAAGGAAATACTTTGCTTCACACTGGTCCGTGGAGGATGTCGATGAAGGATTACAGAAAGGTGACATATTTAGAGCTTTCTTTCGTGTTAATTCTCACAATAGACTTGAGGCCTACTGCAAAATTGACGGATTACCAGTTGATGTCTTAATCAATGGAATTGCATCGCAGAACAGAGCTGTGGAAGGAGACATAGTTGCAATTATGGTGGACCCTCTTACATCGTGGACTAGGATGAAAGGCACTAGCGAGACCCATAACAGTACACACTCAATGGAAGATGCCAACTTACCTGCTGAGGCGACTGAAAATGACGGCCGTAATTGTAAAGGCAAGAATAAACTTGATGCCAGTGTTAAGTCTGACAGTTTTAGGAGTTCCTCTTCACCTGATAAGAGGTGTTGTAGTGAGGACAAAATTTTGGATGGAACTGCTTGTGATGATCTTTTATTAAAGAACGAGCAACGTGATGTATATCAGTCGTCAGTTGTGGATCCTCCAGAAGCACATTATTCTAGAAATCAAGATGATGTGTCTAAGGCCATCCAGAGGATCTGTGCAGTGATTAGTTCATATCCTGGGAAAAGACCGACTGGCAGGGTGGTAGCCATCCTAGAAAAGTCCCGACAGCGAGAAAGTATTGTTGGCCATCTTAATGTCAAGAAGTTTCTCTCCTTCCAGGAGATTTATATGAAAGAGATGAATACAAAATCATGTTTATCGCCATCGCATAATTGTGGATATGTCCAGTTGATGCCTAATGATGCAAGATTCCCAATAATGATGGTTCTTGCAGGAGATTTACCTGACAGCATTAAGAAGAGATTGGACAACGGTGACGTTACGGTTGAAAACGAGTTAGTGGCTGTAAAAATTCATGAATGGGTTAAAGAGAGTTCAGCTCCACAAGCACTTGTCTTGCATGTTTTAGGACGGGGGAGTGAAGTAGCGTCACATATTGATGCTATTTTATTTGAAAATGCGATTCATTCATGTGAATTCTCCAATGATTCGCTGGCTTGCCTTCCTCATACCCCTTGGAAAATCCCACACGAGGAACTTCAATGCAGAAGAGATCTAAGAAATTTATGTATATTTACCATTGATCCTTCTTCTGCCTCGGATCTTGACGATGCTTTATCGGTTCAAAAATTAGCTAATGGCATCTTCAGAGTTGGCATTCATATTGCTGATGTTTCACATTTTGTATTGCCAGATACTGCCTTAGATAAGGAAGCTCAAATCCGATCAACGAGTGTTTATCTTCTGCAGCGCAAGATACCAATGTTGCCTCCGTTACTCTCTAAGAATGTAGGTTCACTTAGCCCTGGAGTGGATAGACTTGCATTTTCATTGTTTTTGGACATAGATAATAGTGGAGATGTTAAAGATCGTTGGATTGGCCGTACTGTGATATGCTCTTGTTGCAAACTCTCATATGAACATGCTCAGGACATAATTGATGGATTGATTGATTCCGATAATTTGAAGAATTTAGGGAATAATTATCCCCAGTTGCATGGTCAGTTTGCATGGCCTGATGTCATTTCATCTGTTAAACTTCTTCATGAAATTTCAAAAACTCTGAAGAAGAAGAGATTTAGAGATGGGGCTTTGCGGCTTGAGAACTCTAAAATAGTATATTTATATGATGAATATGGAATTCCATATGATAGTACGTTTTATGAGCAAAAGGATTCAAATTTTCTTGTCGAGGAGTTCATGCTTTTAGCAAACACAACTGTGGCCGAAGTTATATCCAGAACTTTTCCCGACAGTGCACTATTGAGAAGGCATCCTGAACCTATATTGAGGAAACTCAGAGAATTTGAATCATTTTGTTCTAAGCATGGTTTTGAACTTGACACATCCTCTTCAGTCCAGTTCCAACAGTCATTAGAGCAGATAAGGATAAAACTTCATGATGATCCTTTGCTGTTCGATATTCTCACATCCTACGCTACAAGGCCCATGCAGTTAGCAACTTATTTCTGTAGTGGAGAGTTAAAAGATGGTGAAAAGGGGAGTCATTATGCACTGGCTGTCCCCCTATACACACATTTCACTTCACCATTGCGACGGTATCCTGATATTGTAGTCCATCGCACTCTTGCAGCCGCAATTGAGGCTGAGAAGTTGTATTTGAAGCACCGAGGAATCATACAGAAAGTTAATAGTGATGAGCAGATTAGATGTTTTACTGGCATGTATTTTGACAAGGATGCTGCCGACTCCTTAGAAGGTAGAGAAGCATTATCATCTGCGGCATTAAGGCATGGAGTTCCATGCGCTAAATTACTTGCAGATGTTGCTCTGCACTGCAATGACAGAAAATTGGCTAGTAAGCATGTTGCGGATGGTTGTGATAAGCTCTACATGTGGGCTGTTTTGAAGAAAAAAAAGGTTTTGTTCTCAGATGCTAGGGTATTGGGCCTTGGTCCAAGATTTATGTCTCTGTATATACAGAAGCTGGCTATTGAGCGAAGAATATACTACGATGAAACTGAAGGCTTAGCAGTTGAATGGCTCGAAACTACATCTACATTGGTGCTTAGTTTTTTTGGTACTAGGCGCTCGCATAGGAGTAGAGGTTCAATTAAGTGGAAGGCATTGGAAGATGTTGCACTAGTTGTTTCTCCTTGCGACCATAATGTTAAACAGAGGGCGCTTGGAGTGAGTCCTAGTGAGTTGGGTGGAACAGGCACAGGGGGTGCTGTTGTGGAACAAGAGTCCAATTTGAAATCTCATGTTTCAGATACTGGAATTGACCCTGCAGTTTTCCCCCTCACAGTAAGACTCCTTTCGACAATACCAGTAGCACTTCATGCCGTCGGTGGCGATGATGGACCCATCGACATCGGGGTTAGGCTATACATGAGCTCATATTTAAAGTAA 3384 41.64 MRGAVEQSTPERYDDGDKEKKKKRRSNRRSKQNASISTSVSCSSVNGMPGEASECRENGKINANLTAPSNHSSLTQQAHESNHPIEHGVTRRNKIAFSSLPPLHISEQAELSESQNLINENLHPLDAGGKTIKSCPEQIVCGRMPGISINQHSPPADVTENNTQRKYFASHWSVEDVDEGLQKGDIFRAFFRVNSHNRLEAYCKIDGLPVDVLINGIASQNRAVEGDIVAIMVDPLTSWTRMKGTSETHNSTHSMEDANLPAEATENDGRNCKGKNKLDASVKSDSFRSSSSPDKRCCSEDKILDGTACDDLLLKNEQRDVYQSSVVDPPEAHYSRNQDDVSKAIQRICAVISSYPGKRPTGRVVAILEKSRQRESIVGHLNVKKFLSFQEIYMKEMNTKSCLSPSHNCGYVQLMPNDARFPIMMVLAGDLPDSIKKRLDNGDVTVENELVAVKIHEWVKESSAPQALVLHVLGRGSEVASHIDAILFENAIHSCEFSNDSLACLPHTPWKIPHEELQCRRDLRNLCIFTIDPSSASDLDDALSVQKLANGIFRVGIHIADVSHFVLPDTALDKEAQIRSTSVYLLQRKIPMLPPLLSKNVGSLSPGVDRLAFSLFLDIDNSGDVKDRWIGRTVICSCCKLSYEHAQDIIDGLIDSDNLKNLGNNYPQLHGQFAWPDVISSVKLLHEISKTLKKKRFRDGALRLENSKIVYLYDEYGIPYDSTFYEQKDSNFLVEEFMLLANTTVAEVISRTFPDSALLRRHPEPILRKLREFESFCSKHGFELDTSSSVQFQQSLEQIRIKLHDDPLLFDILTSYATRPMQLATYFCSGELKDGEKGSHYALAVPLYTHFTSPLRRYPDIVVHRTLAAAIEAEKLYLKHRGIIQKVNSDEQIRCFTGMYFDKDAADSLEGREALSSAALRHGVPCAKLLADVALHCNDRKLASKHVADGCDKLYMWAVLKKKKVLFSDARVLGLGPRFMSLYIQKLAIERRIYYDETEGLAVEWLETTSTLVLSFFGTRRSHRSRGSIKWKALEDVALVVSPCDHNVKQRALGVSPSELGGTGTGGAVVEQESNLKSHVSDTGIDPAVFPLTVRLLSTIPVALHAVGGDDGPIDIGVRLYMSSYLK 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3443664 3449235 - CmoCh15G007090.1 Cmo15g00709 398217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 243 258 - -
Cmo15g00709 1127 SUPERFAMILY Nucleic acid-binding proteins 165 370 IPR012340 -
Cmo15g00709 1127 Pfam Dis3-like cold-shock domain 2 (CSD2) 411 490 IPR041505 -
Cmo15g00709 1127 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1102 IPR028591 GO:0000175|GO:0034427
Cmo15g00709 1127 ProSitePatterns Ribonuclease II family signature. 840 864 IPR022966 -
Cmo15g00709 1127 SUPERFAMILY Nucleic acid-binding proteins 482 962 IPR012340 -
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 243 277 - -
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 1 87 - -
Cmo15g00709 1127 SUPERFAMILY Nucleic acid-binding proteins 361 492 IPR012340 -
Cmo15g00709 1127 Pfam RNB domain 520 871 IPR001900 GO:0003723|GO:0004540
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 59 83 - -
Cmo15g00709 1127 SMART RNB_2 520 873 IPR001900 GO:0003723|GO:0004540
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 7 21 - -
Cmo15g00709 1127 Gene3D - 156 260 - -
Cmo15g00709 1127 PANTHER RIBONUCLEASE 27 1125 - -
Cmo15g00709 1127 Gene3D - 394 478 - -
Cmo15g00709 1127 PANTHER DIS3-LIKE EXONUCLEASE 2 27 1125 - -
Cmo15g00709 1127 MobiDBLite consensus disorder prediction 31 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00709 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - csv:101205097 1856.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02458 Cmo15g00709 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01346 Cmo-Chr11:9321294 Cmo15g00709 Cmo-Chr15:3443664 7.85E-78 dispersed
Cmo15g00709 Cmo-Chr15:3443664 Cmo19g00639 Cmo-Chr19:6921376 7.67E-80 dispersed
Cmo15g00709 Cmo-Chr15:3443664 Cmo04g02458 Cmo-Chr4:18180260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00709 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0