Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00710 ATGATTCTGGTTTCGATTTTGAGCTTAGTAGGCGTTGTGAAATCCCAGAGATCATTCTGGCGTCTCAAAACCATCACTGATTTCTTCTGGGCCATCGTAAACATAATTGGTGTGTTCTTTACCACCTTGTTTTCGATGGAAAAATCAGAGGCTTATAGAAAAGGATCCGGTTCTGGAAAGAAATGGGACGGTGGCGGCCCTGGAGGTCCTGGATCAGGGCCTTACGGTGGTGGTCGTCCACGCGGTCCACCTCGCGGTCTCGATAACGTTCGAGGGATCGATCATAGTTCATTACCTGCTTGTGGCTCGTGCTGTGGCTAA 321 49.22 MILVSILSLVGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3451977 3453672 + CmoCh15G007100.1 Cmo15g00710 398218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00710 106 MobiDBLite consensus disorder prediction 53 106 - -
Cmo15g00710 106 Pfam Selenoprotein SelK_SelG 11 80 IPR024491 -
Cmo15g00710 106 PANTHER SELENOPROTEIN K 8 106 IPR024491 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00710 - - - cmos:111444650 143.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02457 Cmo15g00710 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00710 Cmo-Chr15:3451977 Cmo04g02457 Cmo-Chr4:18176795 4.18E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g302 . . . . . . . . Cmo04g02457 Cmo15g00710 . . . . . . . . . . . . . . Cla08g00562 Cam08g0979 Cec08g0569 Cco08g0678 Clacu08g0686 . Cre08g0501 . . . Cone20ag0454 . . . . . . . Bda13g01487 . . . Bma02g00224 . . . . . . Car15g00640 Cpe01g02037 . . . . . . . . . . . . . . . Lsi08g00411 . Chy03g00354 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007179 1 1 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00710 Cmo_Chr15 FPKM 1.207876 1.461791 0.0 0.0 0.0 0.0 0.0 0.094148 0.022949 0.048357