Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00711 ATGGAGGTCGGGAGGGTCCAGGACATCGCTTCCTCGGCGCTCTTCTCCGGTAGTCTCCCGGCTGAGTTCGTCCGCCCCGACACTGAGCAGCCCGGAATCACCACCGTCAAAGGCCAACTCCTCGCCGTTCCCGTCATCGATTTCAAAAACCCAGATGAAGACTCTGTTATCAAAGCCATCGACGACGCTTCTCGCAATTGGGGCATGTTTCAAATCATCAACCACGACATCCCAAATGAAGCAATCGCCCATTTGCAGGCCGTCGGGAAGGCGTTCTTCGAGCTCCCACCGGAGGAGAAAGAGGTCTACGCTAAGCCCCCTGATTCCAAATCCGTCGAAGGCTACGGAACCAAACTCCAAAAGGAAGTCGATGGAAGAAAGGGTTGGGTCGACCATTTGTTCCACATCATTTGGCCCCCTTCTGCCATCAACTTCAAATTCTGGCCCCAAAACCCTCCTTCCTACAGGGCTGCGAATGAGGAGTACAGAAAACACTTACATGGGGTTGTGGATAAGCTCTTCAGAAGCCTCTCGCTGGGGTTGGGGCTTGAAGGGCACGAGCTAAAAGAGAGCGCCGGTGGAGACAAATTGGTGTATTTACTGAAAATCAATTACTACCCGCCATGCCCATGTCCTGATCTGGCTCTTGGAGTCCCTGCTCATACCGACATGTCGACCATTACAATTCTTGTGCCGAATGATGTTCAAGGCCTGCAAGCGTTTAGAGATGGGCATTGGTACAACGTCAATTACATCCCCAATGCCCTCGTTATTCATATCGGCGACCAAATTGAGATACTGAGTAATGGGAAGTACAAGAGTGTGCTCCACAGGACGACGGTGAAAAAGGATAGGGTGAGGATATCATGGCCGGTGTTTCTGGAGCCACCGCCGGAGTTTGAAGTTGGGCCTCATCCGAAATTGGTCGACCAAGACAATCCGCCAAAGTATAAGACGAAGAAGTATGGTGAGTATGCGTATTGCAAGCTAAACAAGATTCCCCAAAGCTCCTGGATTGTGGATTGTGGATTGTTCTTTCTAGTTTCTTTCGTTTTTTTTGTTTCCATGGCTGAGGTGAAGAGATCGAGCGGCACTGTAAGGTGGTTTAGCGCGCAGAAGGGGTTCGGATTCATAGCTCCAGATGATGCTACTGACGATCTTTTTGTTCACCAGACGTCCATTCAATCTGAAGGATTTCGAACTCTTTTCGATGGTCAAGCGGTTGAGTTTGCCATTGATTATGACGAAGATCAACGCGCCAAGGCCGTGGATGTTACTGTAACGGGTAGATCTAGCGGATATGGAGGAGGCCGCGGGGGTGCGAGAGAGGAGGAGGACGGTACGACGGTCCAAGCGGTGGATTCGGCGGCGGGGGTGGTGGTCGTGGCGGTGGTGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATAGGGGAAATGGCGGTGCACCTCCTAGCCGTGGAGGGGGTCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGCGGCGGCGGCGGCGGTCGTGGTTGTTACAATTGTGGAGATACAGGACATTTTGCTAGGGATTGCCAAAATGAAAGCAAATGAAGAATCTGGGTCTTCCTTCAAGCGGTATTTACACTTATTCTGA 1641 51.98 MEVGRVQDIASSALFSGSLPAEFVRPDTEQPGITTVKGQLLAVPVIDFKNPDEDSVIKAIDDASRNWGMFQIINHDIPNEAIAHLQAVGKAFFELPPEEKEVYAKPPDSKSVEGYGTKLQKEVDGRKGWVDHLFHIIWPPSAINFKFWPQNPPSYRAANEEYRKHLHGVVDKLFRSLSLGLGLEGHELKESAGGDKLVYLLKINYYPPCPCPDLALGVPAHTDMSTITILVPNDVQGLQAFRDGHWYNVNYIPNALVIHIGDQIEILSNGKYKSVLHRTTVKKDRVRISWPVFLEPPPEFEVGPHPKLVDQDNPPKYKTKKYGEYAYCKLNKIPQSSWIVDCGLFFLVSFVFFVSMAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVTGRSSGYGGGRGGAREEEDGTTVQAVDSAAGVVVVAVVSATIVAGWVIWRGIVIGEMAVHLLAVEGVVDTAVVGVMAAAAAAAVVVVTIVEIQDILLGIAKMKANEESGSSFKRYLHLF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3454346 3457487 + CmoCh15G007110.1 Cmo15g00711 398219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00711 546 Gene3D - 1 335 IPR027443 -
Cmo15g00711 546 Pfam 2OG-Fe(II) oxygenase superfamily 201 296 IPR044861 -
Cmo15g00711 546 Pfam 'Cold-shock' DNA-binding domain 363 427 IPR002059 GO:0003676
Cmo15g00711 546 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 296 IPR005123 -
Cmo15g00711 546 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 140 IPR026992 -
Cmo15g00711 546 ProSiteProfiles Cold-shock (CSD) domain profile. 361 427 IPR002059 GO:0003676
Cmo15g00711 546 SUPERFAMILY Clavaminate synthase-like 17 333 - -
Cmo15g00711 546 ProSitePatterns Cold-shock (CSD) domain signature. 375 394 IPR019844 -
Cmo15g00711 546 CDD CSP_CDS 364 427 IPR002059 GO:0003676
Cmo15g00711 546 PRINTS Cold shock protein signature 385 394 IPR002059 GO:0003676
Cmo15g00711 546 PRINTS Cold shock protein signature 400 418 IPR002059 GO:0003676
Cmo15g00711 546 PRINTS Cold shock protein signature 364 379 IPR002059 GO:0003676
Cmo15g00711 546 Gene3D - 354 426 IPR012340 -
Cmo15g00711 546 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 7 332 - -
Cmo15g00711 546 SUPERFAMILY Nucleic acid-binding proteins 360 427 IPR012340 -
Cmo15g00711 546 PANTHER OS02G0767300 PROTEIN 7 332 - -
Cmo15g00711 546 SMART csp_8 363 428 IPR011129 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00711 K05278 FLS; flavonol synthase [EC:1.14.20.6] - csv:101219245 602.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00582 Cmo-Chr6:2857978 Cmo15g00711 Cmo-Chr15:3454346 7.41E-14 dispersed
Cmo15g00711 Cmo-Chr15:3454346 Cmo14g00056 Cmo-Chr14:285643 8.00E-62 dispersed
Cmo16g01285 Cmo-Chr16:9158915 Cmo15g00711 Cmo-Chr15:3454346 8.35E-14 dispersed
Cmo04g02456 Cmo-Chr4:18173623 Cmo15g00711 Cmo-Chr15:3454346 0 transposed
Cmo15g00711 Cmo-Chr15:3454346 Cmo04g02454 Cmo-Chr4:18165540 1.08E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g306 . Blo12g00679 . . Bpe02g00077 . . Bma01g02641 . Cmo15g00711 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0457 . . . . . . . . . . . . . . . . . . Car15g00641 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11162 PF03171 2OG-FeII_Oxy 3.00E-23 CL0029 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00711 Cmo_Chr15 FPKM 123.032303 129.64061 3.145602 2.91833 72.448517 79.321251 65.247772 3.653389 3.049126 2.604919