Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00713 ATGGCTTCCATTTCTCAATTTTTCTTCATTTTAATCCTTATTTTGTCGGGAGGGAGAACGGAGAGCGCACGAGTTTTCACCGTAATAAACAACTGCAAGGAAACAATATGGCCGGCGATAACTCCGGGAGACGGTTTCAACGGAGGCGGTTTTGCACTAAAACGCGGTCAGTCAATCGTTTTCAAAGCGCCAGTGGGGTGGTCGGGCCGGATATGGGGTCGAACCGGGTGCAACTTCGACCGGAACGGGAATGGGCAGTGTCAAACCGGAGCCTGTGGGGCATCGCTCAAATGCAAAGCCTCGGGGAAGACACCAGCGTCGCTTGCGGAGTTCACACTTGCGGCGCAGGATTTTTACGACGTGAGCTTGGTGGATGGGTTTAATTTGCCGATGGTGATCACGCCGATCAATGGCACCGGAAAATGCGGCGTGGCAGGGTGCGATGGTGATTTGAGAAGTGATTGCCCGGCGGAATTGGCTGTAAAATCGAACGGGAAAGTTGTCGGGTGCCGGAGCGCGTGCGACGTGTTTGATAAAGATGAGTATTGTTGTAGAGGTGTTTATGGGAATCCGGTGACTTGCCAGCCGACATTTTACTCGAAGAAGTTTAAGGATGCGTGTCCGACAGCGTATAGCTACGCTTACGATGATCCGACAAGCATTTTCACCTGCTCCGCCGCTGATTATGTCGTCAGCTTCTGCTCCAAGAGGGCGCAGCCGGTGTGTACTTACCATAACCACAAGCTAGTTTGCAGTGGATCAAAGGGCTTGAAATCCGTCGTGGGCGGAGGATGGTGGGCTCTAATGGCGGCTATTCTATTTCTCATTAATTCGTCGGTTATTTTTTAA 849 51.47 MASISQFFFILILILSGGRTESARVFTVINNCKETIWPAITPGDGFNGGGFALKRGQSIVFKAPVGWSGRIWGRTGCNFDRNGNGQCQTGACGASLKCKASGKTPASLAEFTLAAQDFYDVSLVDGFNLPMVITPINGTGKCGVAGCDGDLRSDCPAELAVKSNGKVVGCRSACDVFDKDEYCCRGVYGNPVTCQPTFYSKKFKDACPTAYSYAYDDPTSIFTCSAADYVVSFCSKRAQPVCTYHNHKLVCSGSKGLKSVVGGGWWALMAAILFLINSSVIF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3469520 3470599 + CmoCh15G007130.1 Cmo15g00713 398221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00713 282 ProSiteProfiles Thaumatin family profile. 23 234 IPR001938 -
Cmo15g00713 282 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 249 - -
Cmo15g00713 282 Gene3D Thaumatin 25 234 IPR037176 -
Cmo15g00713 282 PANTHER OS03G0233200 PROTEIN 6 249 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 49 58 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 83 112 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Cmo15g00713 282 PRINTS Pathogenesis-related protein signature 225 234 IPR001938 -
Cmo15g00713 282 SMART tha2 26 235 IPR001938 -
Cmo15g00713 282 CDD TLP-PA 25 234 - -
Cmo15g00713 282 SUPERFAMILY Osmotin, thaumatin-like protein 25 234 IPR037176 -
Cmo15g00713 282 Pfam Thaumatin family 30 234 IPR001938 -
Cmo15g00713 282 PIRSF PR5 1 274 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00713 - - - csv:101215275 482.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02452 Cmo15g00713 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00713 Cmo-Chr15:3469520 Cmo16g00402 Cmo-Chr16:1849727 1.09E-114 dispersed
Cmo15g00713 Cmo-Chr15:3469520 Cmo04g02452 Cmo-Chr4:18152431 9.18E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00713 Cmo_Chr15 FPKM 10.190476 12.915355 10.618069 10.281219 12.473742 12.220095 12.46915 9.08623 9.073456 9.191508