Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00714 ATGGCGGGTGCAGGCGGCGGAAAGGTCTCCTTCAAAGTCACTCTCACCTCAGACCCCAAGCTCCCATTTAAAGTGTTTAGCGTTCCAGAGGCCGCGCCCTTCACCGCTGTCCTCAAATTTGCCGCTGAAGAATTTAAGGTGCCTCCGCAAACTAGCGCCATCATCACCAATGATGGCGTTGGAATAAATCCTCAACAAAGTGCTGGCAATGTGTTCCTCAAGCATGGCTCTGAATTGCGCCTGATTCCTCGTGATAGGGTTGGAGCTGCCTGA 273 52.75 MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAA 90
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3471566 3474403 + CmoCh15G007140.1 Cmo15g00714 398222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00714 90 PANTHER UBIQUITIN-FOLD MODIFIER 1 5 90 IPR005375 GO:0071569
Cmo15g00714 90 SUPERFAMILY Ubiquitin-like 5 88 IPR029071 -
Cmo15g00714 90 CDD Ubl_UFM1 9 83 - -
Cmo15g00714 90 Pfam Ubiquitin fold modifier 1 protein 8 82 IPR005375 GO:0071569
Cmo15g00714 90 PANTHER UBIQUITIN-FOLD MODIFIER 1 5 90 - -
Cmo15g00714 90 Gene3D - 6 89 - -
Cmo15g00714 90 PIRSF Ufm1 1 90 IPR005375 GO:0071569
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00714 K12162 UFM1; ubiquitin-fold modifier 1 - csv:101220671 179.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02451 Cmo15g00714 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00714 Cmo-Chr15:3471566 Cmo04g02451 Cmo-Chr4:18149268 3.10E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g311 . . . . . . . . Cmo04g02451 Cmo15g00714 . . . . . . . . . . . . . . . . . . . . . Cone4ag1381 Cone7ag1550 . . . . . . . Blo18g00192 . Bda01g01414 Bpe02g01627 . . . . . . . . Car04g02270 Car15g00646 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009163 1 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00714 Cmo_Chr15 FPKM 6.48978 7.537677 7.372958 8.67568 5.781 5.608932 6.6067 10.666157 10.038839 11.389066