Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00716 ATGGACAGGGAGGCTAACCTTCCGGTCCCGCTCGCACTTGAGAAGAAAGTGAGCCGTCAGACAAACTCAGAAACTACGACCTCGTCTTCCTCCTCCTCATCGCCGGACTTCCTGCGGCATGTTCAAGCCGCCTTCAAGCGCCATCAACTACTTGGTGTGACGCAATCAAATAGTTTAAGACCCAGGCGCTTGTTAGTTCCCCAAAGAGAGGTGTCAAGGAACCCACGTTCGGAGGCCAGGCTTGCAGAAAGTGTGAGTCGAGATCATGCAGTGAAGGATTTGATTGAACAGACGAAGAGTACAATGACTATTATTGGTGAAACCCAAGATGAATCAATAACGCGGCCTTCCATGTCAGGCCTGATGACCAAAAGCTTTGATGGAAGTTTCACATCTGATGCCCACAGAGATGAACTTGTACGTGGTGTTGGTTGTCAATCAAGGAGCACATCATCCACTTTAAATACAGAATCCCAGCATGTTGATGGTCAGAAAATGGTTCGGTTTTCTGTTAAAACCAACAAGATATATCAGGAGATGGATTGGATGGCCGGCCGCCAAGGAGAAGCTTATAGTGTCATCAATCATGGTGAATGTAAGCACCGAAGTTTCCCAAACACAGAGACTGATATGAACGTGAAGAACAATGGTGGGGTTTCAATGTTGGCACAAAAAACGCCAGCTGTGGAAGAAAAACTCAAGCGATTTGAAAACTTTTTGACTCAACCAGTTTGTCAACCTTCATTTGATCCACCTTGTGCAACCACCACGTCTGTTCACTCAAATTCAGTGCTTATGCTTAATTCAACGACCTATAGCTCTCATTTGCATCAAGAAAGTGGTGGTAGTATTGCTACCGAACCTTTGAGTGACTTTAATGCAAATATTCAACATGAAGCTAAAAGAAGTGTGTTGCCAACATCAGGGTCTTCTCTAAAGGACATTACGGACGAGGTCAAGAATGGGAAAGGCAATGATGCCCTACATGCTCAGGGTCTTACTGCTAATACAGAAAATGTTAGAAGCAACTATGACATCTCTAAGGATCAGAGGGAAAAGTTAGCTAGAGATAGTGATATTTCGAAACATTCTTTGCAACACAATGATAAATCATATGAAGGCAAATGTTTCATAGGGGACGCCACTGATTCAAAGTCCAAGGCCCAAGTACCCAGAAAGGCAGTTTCGGATGTGAATTTGAACCCCTCTGATTCAGAAAAACAAGAAAAAGTGGCAAGTGGGAAGAACACATCAACAACTCGTAAAAGGAATTATGATCCAGACATGTTTTTTAAGGTTAATGGAAAGCTTTATCAAAGACTTGGCAAGATAGGCAGTGGAGGAAGCAGTGAGGTTCACAAAGTTATCTCATCAGATTGCACGATATATGCACTGAAGAAAATTAAACTAAAAGGTCGTGATTATACCACTGCTTATGGGTTCTGTCAGGAGATTGTGTATTTAAATAAGTTGAAAGGAAAGGATAACATTATACAACTTGTAGATTATGAGGTAACAGATAGGACTTTACTTCAGGAAGTGTTGAATGGCTCCACGAATCATAAAGATGCTAGGGTTAAGGATGATGGATATATATACATGGTGCTAGAGTATGGCGAAATTGATTTGGCTCACATGCTCTCACAGAAATGGAAGGAAATTGATGGCTCCGATCAGATAATAGATGAAAATTGGCTTCGATTCTATTGGCAGCAAATTCTTCAAGCTGTAAACACCATACACGAGGAACGCATTGTTCACTCTGATTTGAAGCCCGCAAATTTTCTTCTCGTCAAAGGCTCGTTAAAACTAATTGACTTTGGTATTGCAAAAGCCATAATGAGTGATACTACTCATATCCAAAGGGATTCACAGGTGGGTACACTGAGTTACATGTCACCCGAGGCATTTATGTGCAATGAGAAAGATGCAAATGGAAACACCATCAAGTGTGGTCGACCATCTGATATTTGGTCCCTTGGCTGCATTCTTTATCAAATGGTTTATGGAAGGACCCCCTTCTCCGAGTATAAGACATTCTGGTCGAAGTTTAAAGTCACTACAGACCCAAATCATAAGATTAAATATGAACCCGTTGGCAACCATTGGCTTCTTGATCTTATGAAGAAGTGCCTTGCATGGGACCGCCATGAGAGGTGGAGAATTCCTCGGTTACTTCAACATCCTTTCCTCGTACCCCCAGGCTCCCCACACCTATCCTTCTCTCAAGACCAGAGTTCCAAACTTCTGCAACTTATTGCCGAATCTTGTGAAAGTGATCAGGAAGCTTCGTATCTGCGTTCTCAGCTTCAACTTCTCCTCAACTCTGTGCAGCCGATGACATCTCTGTTAATAACTTCTAAAGACAATCAAAGTGAGCTGTTTTCCAAATCGTCAAAGAACTATTTTCTTCTCTACAAGGATGTGGCATCACAGAAGGATGAAAGGTGA 2451 42.39 MDREANLPVPLALEKKVSRQTNSETTTSSSSSSSPDFLRHVQAAFKRHQLLGVTQSNSLRPRRLLVPQREVSRNPRSEARLAESVSRDHAVKDLIEQTKSTMTIIGETQDESITRPSMSGLMTKSFDGSFTSDAHRDELVRGVGCQSRSTSSTLNTESQHVDGQKMVRFSVKTNKIYQEMDWMAGRQGEAYSVINHGECKHRSFPNTETDMNVKNNGGVSMLAQKTPAVEEKLKRFENFLTQPVCQPSFDPPCATTTSVHSNSVLMLNSTTYSSHLHQESGGSIATEPLSDFNANIQHEAKRSVLPTSGSSLKDITDEVKNGKGNDALHAQGLTANTENVRSNYDISKDQREKLARDSDISKHSLQHNDKSYEGKCFIGDATDSKSKAQVPRKAVSDVNLNPSDSEKQEKVASGKNTSTTRKRNYDPDMFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYTTAYGFCQEIVYLNKLKGKDNIIQLVDYEVTDRTLLQEVLNGSTNHKDARVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDGSDQIIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTHIQRDSQVGTLSYMSPEAFMCNEKDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWSKFKVTTDPNHKIKYEPVGNHWLLDLMKKCLAWDRHERWRIPRLLQHPFLVPPGSPHLSFSQDQSSKLLQLIAESCESDQEASYLRSQLQLLLNSVQPMTSLLITSKDNQSELFSKSSKNYFLLYKDVASQKDER 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3479276 3484062 + CmoCh15G007160.1 Cmo15g00716 398224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00716 816 PANTHER MIXED LINEAGE PROTEIN KINASE 20 781 - -
Cmo15g00716 816 Pfam Protein kinase domain 438 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00716 816 MobiDBLite consensus disorder prediction 16 35 - -
Cmo15g00716 816 CDD PKc_Mps1 436 731 - -
Cmo15g00716 816 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 20 781 IPR027084 GO:0004712|GO:0007093|GO:0051304
Cmo15g00716 816 MobiDBLite consensus disorder prediction 1 35 - -
Cmo15g00716 816 MobiDBLite consensus disorder prediction 388 425 - -
Cmo15g00716 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Cmo15g00716 816 Gene3D Phosphorylase Kinase; domain 1 431 517 - -
Cmo15g00716 816 ProSitePatterns Protein kinases ATP-binding region signature. 444 466 IPR017441 GO:0005524
Cmo15g00716 816 SUPERFAMILY Protein kinase-like (PK-like) 432 737 IPR011009 -
Cmo15g00716 816 ProSiteProfiles Protein kinase domain profile. 438 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00716 816 SMART serkin_6 438 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00716 816 Gene3D Transferase(Phosphotransferase) domain 1 553 734 - -
Cmo15g00716 816 MobiDBLite consensus disorder prediction 304 345 - -
Cmo15g00716 816 MobiDBLite consensus disorder prediction 396 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00716 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - csv:101214794 1357.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02447 Cmo15g00716 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00716 Cmo-Chr15:3479276 Cmo04g02435 Cmo-Chr4:18073433 1.08E-21 dispersed
Cmo15g00716 Cmo-Chr15:3479276 Cmo04g02447 Cmo-Chr4:18131170 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74916 PF00069 Pkinase 4.50E-55 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00716 Cmo_Chr15 FPKM 11.347308 12.122171 15.074347 15.000073 14.848101 15.506247 15.380456 15.998347 14.381391 13.434007