Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00725 ATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGCGTCGATTCACATAAAAGCGGGTTTGGAGATTCCCGATAACAAGCCGCTCAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCGAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCGTTGA 447 46.31 MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASR 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3537178 3538122 - CmoCh15G007250.1 Cmo15g00725 398233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00725 148 Gene3D 30s ribosomal protein s13, domain 2 98 147 IPR027437 -
Cmo15g00725 148 Gene3D - 31 96 - -
Cmo15g00725 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 5 146 - -
Cmo15g00725 148 Pfam Ribosomal protein S13/S18 32 133 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo15g00725 148 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 5 146 - -
Cmo15g00725 148 MobiDBLite consensus disorder prediction 119 148 - -
Cmo15g00725 148 ProSitePatterns Ribosomal protein S13 signature. 112 125 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo15g00725 148 ProSiteProfiles Ribosomal protein S13 family profile. 31 136 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo15g00725 148 SUPERFAMILY S13-like H2TH domain 32 136 IPR010979 GO:0003676
Cmo15g00725 148 Hamap 30S ribosomal protein S13 [rpsM]. 21 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00725 K02952 RP-S13, rpsM; small subunit ribosomal protein S13 - csv:101219478 235.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02575 Cmo-Chr4:18842777 Cmo15g00725 Cmo-Chr15:3537178 1.45E-09 dispersed
Cmo09g01132 Cmo-Chr9:6492519 Cmo15g00725 Cmo-Chr15:3537178 1.18E-09 dispersed
Cmo15g00584 Cmo-Chr15:2823941 Cmo15g00725 Cmo-Chr15:3537178 1.96E-09 dispersed
Cmo15g00724 Cmo-Chr15:3534207 Cmo15g00725 Cmo-Chr15:3537178 1.02E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g323 . . . . . . . . . Cmo15g00725 . . . . . . . . . . . . . . . . . . . . . Cone4ag1375 Cone7ag1557 . . . . . . Blo17g00193 . . Bda13g01499 . Bpe14g00367 . Bma02g00238 . . . . . . Car15g00655 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014308 0 4 0 0 0 1 0 1 1 1 0 1 1 0 1 1 1 0 0 1 2 1 1 1 1 0 0 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00725 Cmo_Chr15 FPKM 1.755039 2.375388 0.0 0.0 1.879563 1.478582 1.838911 0.0 0.0 0.0