Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00727 ATGGCGGCTACGGTTGATCGCAAAGCCCTCGACGTGGAGACAGCCTCCAATGGCGGATTTCCGGTTCAACGCTGCAACTCGTTCCGGTCCTCTAGTTTCAAATTGAAGCGCAAACCGGAAATAAGTCTTAGTATTGATGATGATGATGATGATGATTCGTCCTTTGATCGGAACGATGAGAATGTTAATTACTATCGAGAGTTGATCCGGAAGGGCAAGGAGGAAATCGAACCGTCCATTCTTGATCCAAGGGACGAGGGCACGGCGGACAATGGGGTTATGAGAAATCCTTCCATCCTCCGTCTTACCGGAAAACATCCCCTCAACGCTGAGCCGCCGTTGGACCGTCTAATGCGCCACGGTTTCATTACACCGGCTCCACTTCACTATGTCCGAAACCACGGTCCTGTCCCTAAGGTTGACTCATCTAATTGGACGGTCGAGATCACTGGGCTCGTCCAAAATCCGACATCCTACACGCTCCATCAGCTTCTCAATGACTTCAGGTCGATCGAATTTCCAGTCACTATAATGTGCTCAGCTAACCGACGAAAAGAGCTAAATATGGTCAAACAAACTATTGGATTTCATTGGGGAGCAGCCGTGACCTCTACCTCATTGTGGCGGGGCGTGCCATTACGCGAAGTGCTAAAACGGTGTGGCATCTTTAGTCGCCATAGAGGAGCCTTATACATATGGATGGAAGGTGCGGACGACCTCCCCGGCGGAGGAGGCTGCACCTATGGCACGAGCATAAGTAGAGAAATGGCAATGGACCCATCAAGAGATATCATAATAGCCTACATGCAAAATGGTGAGCCTATCCCACCGGACCATGGCTTTCCAGTAAGGATGATTGTACCAGGGTTCACCGGTGGTCGTATGGTCAAGTGGCTCAAACGAATCATCGTCACTAATAGAGAATCTGACAATTACTATCATTTTATGGATAATCGTGTGCTTCCATCCCACGTGGATTCCGAACTGGCTAATGCTGAAGGTTGGTGGTATAAACCAGAATATGTTGTCTACGAGATGAACATAAACTCGGTGATAACAACACCGTCACATGATGAGACGTTATTGATTAGTTCAAAGAAGACCCAGTCGACGTACACATTGAGGGGATATGCATTTTCAGGTGGTGGGAAGAAAGTGACACGGGTGCAGGTGACGTTGGACGGTGGGGAGACGTGGAAAATATGTAATTTGGAGTACCATGAGAAACCCAACAAGTATGGGAAATATTGGTGCTGGATTTTCTGGTCGGTTGAGGTGGAAATTGTGGAGCTGTTTGGCTCCAAGGAAATTGCTGTCCGAGCTTGGGATGAGACTAACAACACCCAACCAGAAAACCTCAATTGGAATCTCATGGGCATGATGAACAACTCATGGTTTCGAATCAAGATTAACGTATGCAAACCCCAAAACGGAGAGCTGGGAATCGTGTTCCGCCACCCAACTCTCCCCGGCCACCAGTCCGGCGGCTGGAAGGGAAAGGACAAAATCAATCCCACCGACCCACCTTCCTCAAAACCCACAAACGACAAAAACAAGACCACCGCCTCCAAAACCTTCTCCATGTCGGAAGTCAAAACCCACAACACGCCGGAATCCTCCTGGATCGTCGTCCACGGCCACGTCTACGACTGCACTCCGTTTCTCAAAGCCCACCCCGGCGGCGCCGACAGCATCCTCATCAACGCCGGAACCGACTGCACCGAGGAGTTCGACGCCATCCACTCCGACAAAGCCATAAACATGCTGGAAGACTACATAATCGGCGACTTATTGACCGAAAACGACAATGAAGAGAAGACGTCATCATCCGAAGCGGTTGAACAACACGTGGCACTGGTCCCAGGAAAGAAAATCCCGGTAAAATTGATATCGAAGATTTCAATATCTCACAACACGAGAATTTTCCGGTTCGGTTTATCGTCAAAAGACCAAGTTTTGGGACTACCCGTCGGAAAGCACATATTTTTATGCGCCATTATCGAGGGGAAGCTCTGCATGAGAGCCTACACGCCGTCCAGCTCCGTTGACGAAATGAGCTTCTTTGACTTAGTTGTAAAAGTCTACTTCAAGAATGTACATCCCGACTTCCCAAATGGCGGCCTCATGTCGCAGTATCTAGACTCACTCCCATTGGGCTCAACCGTGGACGTAAAAGGCCCATTGGGCCACATAGAATACATGGGCCGCGGCAACTTCACAGTCCATGGAAAGCCCAAATTCGCGAAGAAGCTGGCGATGGTGGCCGGCGGGACAGGGATAACGCCCATATATCAAGTGGTGCAGGCGATATTAAAGGATCCGCAGGACAAGACGGAGATGTATGTGGTGTATGCGAATCGGACGGAGGAGGATATTCTGCTGAGGGAGGAGTTGGACACGTGGGCGAAGGAGAATGAGAGATTGAAAATATGGTACGTTGTGAAGGAGGGCGTTAAGGAAGGGTGGCCGTACAGCGTGGGGTATATTAAGGAAAGTGTTCTGAGAGAGCATATTCCGATGGGGTCGCCGGAGAGTCTGGCTTTGGTGTGTGGGCCGCCGCCGATGATTGAGTTGACAGTGAAGCCCATATTGAAAGAAATGGAGTATGACTTAGAGGCTTCGTTGCTGGTGTTTTGA 2637 49.72 MAATVDRKALDVETASNGGFPVQRCNSFRSSSFKLKRKPEISLSIDDDDDDDSSFDRNDENVNYYRELIRKGKEEIEPSILDPRDEGTADNGVMRNPSILRLTGKHPLNAEPPLDRLMRHGFITPAPLHYVRNHGPVPKVDSSNWTVEITGLVQNPTSYTLHQLLNDFRSIEFPVTIMCSANRRKELNMVKQTIGFHWGAAVTSTSLWRGVPLREVLKRCGIFSRHRGALYIWMEGADDLPGGGGCTYGTSISREMAMDPSRDIIIAYMQNGEPIPPDHGFPVRMIVPGFTGGRMVKWLKRIIVTNRESDNYYHFMDNRVLPSHVDSELANAEGWWYKPEYVVYEMNINSVITTPSHDETLLISSKKTQSTYTLRGYAFSGGGKKVTRVQVTLDGGETWKICNLEYHEKPNKYGKYWCWIFWSVEVEIVELFGSKEIAVRAWDETNNTQPENLNWNLMGMMNNSWFRIKINVCKPQNGELGIVFRHPTLPGHQSGGWKGKDKINPTDPPSSKPTNDKNKTTASKTFSMSEVKTHNTPESSWIVVHGHVYDCTPFLKAHPGGADSILINAGTDCTEEFDAIHSDKAINMLEDYIIGDLLTENDNEEKTSSSEAVEQHVALVPGKKIPVKLISKISISHNTRIFRFGLSSKDQVLGLPVGKHIFLCAIIEGKLCMRAYTPSSSVDEMSFFDLVVKVYFKNVHPDFPNGGLMSQYLDSLPLGSTVDVKGPLGHIEYMGRGNFTVHGKPKFAKKLAMVAGGTGITPIYQVVQAILKDPQDKTEMYVVYANRTEEDILLREELDTWAKENERLKIWYVVKEGVKEGWPYSVGYIKESVLREHIPMGSPESLALVCGPPPMIELTVKPILKEMEYDLEASLLVF 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3549157 3552290 + CmoCh15G007270.1 Cmo15g00727 398235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00727 878 CDD eukary_NR_Moco 85 470 - -
Cmo15g00727 878 Pfam Oxidoreductase FAD-binding domain 627 733 IPR008333 -
Cmo15g00727 878 CDD cyt_b5_reduct_like 627 870 - -
Cmo15g00727 878 PANTHER NADH-CYTOCHROME B5 REDUCTASE 60 878 IPR001834 GO:0016491
Cmo15g00727 878 Gene3D Translation factors 614 728 - -
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 259 275 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 388 400 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 440 452 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 276 289 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 453 466 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 175 186 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 186 198 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 374 388 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 343 355 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 415 425 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 292 305 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 100 114 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 122 138 IPR008335 GO:0016491
Cmo15g00727 878 PRINTS Eukaryotic molybdopterin domain signature 201 216 IPR008335 GO:0016491
Cmo15g00727 878 Pfam Mo-co oxidoreductase dimerisation domain 341 472 IPR005066 GO:0016491|GO:0030151
Cmo15g00727 878 MobiDBLite consensus disorder prediction 39 58 - -
Cmo15g00727 878 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 151 186 IPR022407 GO:0043546
Cmo15g00727 878 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 622 734 IPR017927 GO:0016491
Cmo15g00727 878 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 523 598 IPR001199 -
Cmo15g00727 878 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 523 601 IPR036400 -
Cmo15g00727 878 PIRSF Nitr_rd_NADH 20 877 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cmo15g00727 878 Pfam Oxidoreductase NAD-binding domain 753 859 IPR001433 GO:0016491
Cmo15g00727 878 SUPERFAMILY Riboflavin synthase domain-like 615 735 IPR017938 -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 846 854 - -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 719 733 - -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 752 771 - -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 790 801 - -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 674 681 - -
Cmo15g00727 878 PRINTS Cytochrome B5 reductase signature 653 664 - -
Cmo15g00727 878 Gene3D - 729 878 IPR039261 -
Cmo15g00727 878 MobiDBLite consensus disorder prediction 507 531 - -
Cmo15g00727 878 Gene3D - 345 519 - -
Cmo15g00727 878 PANTHER NITRATE REDUCTASE 60 878 - -
Cmo15g00727 878 SMART Cyt_b5_2 526 598 IPR001199 -
Cmo15g00727 878 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 554 561 IPR018506 GO:0020037
Cmo15g00727 878 PRINTS Cytochrome B5 signature 585 597 IPR001199 -
Cmo15g00727 878 PRINTS Cytochrome B5 signature 558 572 IPR001199 -
Cmo15g00727 878 PRINTS Cytochrome B5 signature 548 558 IPR001199 -
Cmo15g00727 878 PRINTS Cytochrome B5 signature 573 580 IPR001199 -
Cmo15g00727 878 Pfam Oxidoreductase molybdopterin binding domain 134 313 IPR000572 -
Cmo15g00727 878 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 721 872 IPR039261 -
Cmo15g00727 878 Gene3D - 520 608 IPR036400 -
Cmo15g00727 878 SUPERFAMILY E set domains 345 472 IPR014756 -
Cmo15g00727 878 Gene3D - 104 344 IPR036374 -
Cmo15g00727 878 MobiDBLite consensus disorder prediction 492 531 - -
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 557 567 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 674 681 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 846 854 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 790 801 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 706 715 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 822 838 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 752 771 IPR001709 GO:0016491
Cmo15g00727 878 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 778 787 IPR001709 GO:0016491
Cmo15g00727 878 Pfam Cytochrome b5-like Heme/Steroid binding domain 528 597 IPR001199 -
Cmo15g00727 878 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 83 343 IPR036374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00727 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101219242 1517.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00648 Cmo15g00727 CCT
Cmo04g02441 Cmo15g00727 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00507 Cmo-Chr8:3156691 Cmo15g00727 Cmo-Chr15:3549157 1.63E-11 dispersed
Cmo15g00080 Cmo-Chr15:406367 Cmo15g00727 Cmo-Chr15:3549157 2.53E-57 dispersed
Cmo15g00727 Cmo-Chr15:3549157 Cmo15g00729 Cmo-Chr15:3567136 0 dispersed
Cmo15g00726 Cmo-Chr15:3541728 Cmo15g00727 Cmo-Chr15:3549157 0 tandem
Cmo15g00727 Cmo-Chr15:3549157 Cmo15g00728 Cmo-Chr15:3560436 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00727 Cmo_Chr15 FPKM 0.75443 1.139785 10.685327 11.369224 1.499855 1.621806 1.09297 3.974014 4.375285 4.220254