Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00733 ATGCATCACCTGCCTCAGTTTTTCTCTCCCAGGAAGCGAAGCAAAGCCATGGATCCGAGGAAAATTGCAGGGAAACCCAAGCTTTACCGACTTAATGCGGCCAAGAACATCGACTATGACGCTGCTTACACGTCTTCTTCGTTCGATGATTCCTCTGGGTCTCTCTACACTCGCTCCATGGAGACCTTCAATCCCTCGAGCTTCCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTCGCTATTCCGATGGAGGCTTGGGAGGCCAGGAAGGTTCGTTCATCTTCTGATATTCTACCGAGGTCGAGGCTGTATCCCGTGGATAGTCCAAAGACAGAGGAGATTAGTAAGGAGAAGGAAGATGAAGAAAACGAAGACGAATTGTGCCGGAGGGTTAAGGATTCAGTACGAATTAGCGATGAGATGTCCACGCTGAAGACTGAACTTCCCGAGTTGAATGAACGCTGTATGGATACTGTTACTGGACGTAGCCCGAGAAGTGGAATCAATGGTGCTCGGCCTCCCTTACTCAAGCCGCCGCCGTGTATGCGGCTTCCAGATTTTGATAACGCTTTCTCGACTTGGGACATTTTGAAAGCTTTTGCTCCATTAGAGGATGATAAAAAACAGGATGAAGTAGAAGAACGAGTCGAACCTTTGGTTGAACGAGAAGTCGAGGAAAATATTGTCAGGCCCGAGGAGAGCGCAGCGCTCATAGAGTCCTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACGACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTAAACCCATTATCACATCCTGGGTGGAAACCGGTAGGCTTCTTGGACGCGGTTCATTTGGATCAGTTTCCGAAGCAATTTCAGAGGATGGAATCTTTTTTGCTCTTAAAGAAGTTTCACTGCTCAATGAAGATAGTCAGGGAAGACAGAGCATCTTTCAACTTCAGCAGGTATTACACTTGTTCGAGATATCTCTTCTAAGTGAATTTGAGCATGAGAACATAGTCCAGTACTACGGCACACATTCGGTATTGCCCTTCTCCGATGGGTCAAAACTCTATATCTTCCTGGAGCTTGTATCTCAAGGCTCCCTTCTGAATTTATATCAGAGAACAAACCTTCTGGATTCCATTGTTTCTGCCTATACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATGTGAATGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCGAAGGCAACAAAATTCAACGACGTTAAATCTTGCAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATACGGGCTTCCGGCCGATATTTGGAGCCTTGGGTGTACAGTATTGGAAATGTTAACTCGAAAGCTTCCGTACTCAGAAGTCGAAAGTCCTATGCAGGCACTATTTAGGATTGGAAAAGGCAAAGCGCCTGTAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTTTGCAGTGCCTACAAGTTAATCCACACGACCGTCCTATCGCTGCTGATCTAATAAATCATCCGTTTGTGAAACGACCAGTTTCCAGTTTATCAGTGTCGGCATCTCCTTACAACAAGCCAGGCAGAAGAATTTAA 1725 46.2 MHHLPQFFSPRKRSKAMDPRKIAGKPKLYRLNAAKNIDYDAAYTSSSFDDSSGSLYTRSMETFNPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSDILPRSRLYPVDSPKTEEISKEKEDEENEDELCRRVKDSVRISDEMSTLKTELPELNERCMDTVTGRSPRSGINGARPPLLKPPPCMRLPDFDNAFSTWDILKAFAPLEDDKKQDEVEERVEPLVEREVEENIVRPEESAALIESWGSFTTSNDDDSSSSTTEPANISPNMRGKPIITSWVETGRLLGRGSFGSVSEAISEDGIFFALKEVSLLNEDSQGRQSIFQLQQVLHLFEISLLSEFEHENIVQYYGTHSVLPFSDGSKLYIFLELVSQGSLLNLYQRTNLLDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDVNGSVKLADFGLAKATKFNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSEVESPMQALFRIGKGKAPVVPESLPKDAQDFILQCLQVNPHDRPIAADLINHPFVKRPVSSLSVSASPYNKPGRRI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3583896 3588366 - CmoCh15G007330.1 Cmo15g00733 398241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00733 574 MobiDBLite consensus disorder prediction 256 278 - -
Cmo15g00733 574 ProSiteProfiles Protein kinase domain profile. 289 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00733 574 MobiDBLite consensus disorder prediction 172 192 - -
Cmo15g00733 574 MobiDBLite consensus disorder prediction 113 139 - -
Cmo15g00733 574 MobiDBLite consensus disorder prediction 256 276 - -
Cmo15g00733 574 SUPERFAMILY Protein kinase-like (PK-like) 263 564 IPR011009 -
Cmo15g00733 574 PRINTS Tyrosine kinase catalytic domain signature 412 430 IPR001245 GO:0004672|GO:0006468
Cmo15g00733 574 PRINTS Tyrosine kinase catalytic domain signature 377 390 IPR001245 GO:0004672|GO:0006468
Cmo15g00733 574 PRINTS Tyrosine kinase catalytic domain signature 478 500 IPR001245 GO:0004672|GO:0006468
Cmo15g00733 574 PRINTS Tyrosine kinase catalytic domain signature 522 544 IPR001245 GO:0004672|GO:0006468
Cmo15g00733 574 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 24 153 - -
Cmo15g00733 574 MobiDBLite consensus disorder prediction 119 139 - -
Cmo15g00733 574 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 178 563 - -
Cmo15g00733 574 Pfam Protein kinase domain 290 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00733 574 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 178 563 - -
Cmo15g00733 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cmo15g00733 574 Gene3D Transferase(Phosphotransferase) domain 1 288 569 - -
Cmo15g00733 574 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cmo15g00733 574 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 24 153 - -
Cmo15g00733 574 SMART serkin_6 289 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00733 K13414 MEKK1; mitogen-activated protein kinase kinase kinase 1 [EC:2.7.11.25] - csv:101218538 876.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02435 Cmo15g00733 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00733 Cmo-Chr15:3583896 Cmo02g01089 Cmo-Chr2:6606331 2.30E-73 dispersed
Cmo15g00733 Cmo-Chr15:3583896 Cmo04g02435 Cmo-Chr4:18073433 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g328 . Blo12g00687 . . Bpe02g00081 . . Bma01g02638 Cmo04g02435 Cmo15g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00197 Blo18g00199 Bda11g00746 Bda01g01408 Bpe02g01619 Bpe14g00364 Bma01g00841 Bma02g00241 . . . . . Car04g02247 Car15g00659 Cpe01g02021 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002867 2 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 1 5 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74917 PF00069 Pkinase 1.80E-61 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00733 Cmo_Chr15 FPKM 0.339321 0.557291 3.12417 3.506942 2.087049 1.226158 2.21152 4.577577 5.851358 6.113082