Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00739 ATGGAGAACGCCGACGTCTTTTTGGGTTTACACGACTTTCTTGAGCGCATGCGTCGACCAACAGCCTCGGATTTCGTCAAATCCATTAAAAGCTTTATTGTGTCATTTTCAAATAATGCTCCTGACCCTGAAAGGGATAGTGCTTCCGTCCAAGAATTCTTTACCAAAATGGAGGGATCTTTCAGAGCTCATCCGCTTTGGTCCGGTTCCTCGGAAGAAGAACTGGAAAGTGCTGGTGAGGGATTGGAGAAGTATGTCATGACAAAGTTATTTTCTCGAGTATTTGCTTCATTTGCAGATGATGTCAAAAGAGACGAAGAACTTTCTGAAAAAATGGCACTGATTCAACAGTTTATTAGGCCAGAAAATTTGGATATCAAACCAAATTTCCAAAATGAAACATCATGGTTGCTTGCTCAGAAAGAACTCCTGAAGATTAACATGCACAAAGCACCAAGAGACAAGCTTGTGTGTCTTCTCAGTTGTTGTAAGGTCATCAGTAACCTGCTACTTAATGCTTCTATTGCTTCAAATGAGAATCCTCCGGGGGCTGATGAATTCCTTCCCGTCCTCATTTATGTTATCATAAAGGCAAACCCTCCACAACTGCACTCAAATTTATTGTATATACAACGATACAGGGGACAATCCCGATTAACTGGGGAAGCAGCATATTTTTTCACAAATATACTCTCTGCCGAGTCCTTTATCTCAAACATTGATGCAAATGCCCTCTCAATGGAAGAAACTGAGTTTGGAAAAAACATGGAATCTGCTCGAGCACTCCTATCTGGGCTCTCTAGTGATGTTCAAGCCCTTTCTAACAAAAGTAACTTGGATGAAGGGGTTGTCCGTTATTCAGAACCTGTAGAAACCAGTTCTCAAGCTTCAAATGCTGGTGTTGGCCCTGCAGTTAGACCTAAGTTCACTGTAGCAAAGCCCAGAACTGAGGCATCACATGCCAAGGATCAGTCAACAGTAATGGAAGTTCCATCCCTCTCAGATTTGGAGAATAAGGGAGCAGCTATTCTTTTAAATGATCACACAGGAGGGAGGCAGGCCTTCCGAGATTATCCATATTTGTTTGCCCAAGCTGGGGATCTTACATTTAATGACGTAGAAGAGCTTCTGAGTCAATACAAACAACTTGTTTTCAAGTACGTTTCCCTTTCTAAAGGACTGAATCTCACAACTGCATCTGCATCTTTGTCAAATTCTGAAATGCACTCCCAACCTCACCACGAGTCTCTTAAAGAATTTGAAGATGTTAGAGATGTGACATCAAATGATGAGTCAGCCGGAGAGCCACATAGGATAATTGATGGCTCAGATGGAACCTCACTGTTGGGAGAAGAAAACGACGAGACAAGGTAA 1374 42.14 MENADVFLGLHDFLERMRRPTASDFVKSIKSFIVSFSNNAPDPERDSASVQEFFTKMEGSFRAHPLWSGSSEEELESAGEGLEKYVMTKLFSRVFASFADDVKRDEELSEKMALIQQFIRPENLDIKPNFQNETSWLLAQKELLKINMHKAPRDKLVCLLSCCKVISNLLLNASIASNENPPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNILSAESFISNIDANALSMEETEFGKNMESARALLSGLSSDVQALSNKSNLDEGVVRYSEPVETSSQASNAGVGPAVRPKFTVAKPRTEASHAKDQSTVMEVPSLSDLENKGAAILLNDHTGGRQAFRDYPYLFAQAGDLTFNDVEELLSQYKQLVFKYVSLSKGLNLTTASASLSNSEMHSQPHHESLKEFEDVRDVTSNDESAGEPHRIIDGSDGTSLLGEENDETR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3631849 3636622 - CmoCh15G007390.1 Cmo15g00739 398247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00739 457 Coils Coil 256 276 - -
Cmo15g00739 457 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Cmo15g00739 457 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Cmo15g00739 457 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Cmo15g00739 457 MobiDBLite consensus disorder prediction 405 457 - -
Cmo15g00739 457 Gene3D VPS9 domain 98 265 IPR037191 -
Cmo15g00739 457 SMART vps9_2 135 252 IPR003123 -
Cmo15g00739 457 Gene3D - 17 97 - -
Cmo15g00739 457 PANTHER BNAC09G47180D PROTEIN 1 408 - -
Cmo15g00739 457 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 408 IPR045046 GO:0005085|GO:0016192
Cmo15g00739 457 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Cmo15g00739 457 MobiDBLite consensus disorder prediction 411 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00739 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - csv:101211579 762.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02424 Cmo15g00739 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00739 Cmo-Chr15:3631849 Cmo04g02424 Cmo-Chr4:18006448 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g334 . . . . . . . . Cmo04g02424 Cmo15g00739 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1256 Cone20ag0471 . . . . Blo17g00201 . . Bda13g01504 . Bpe14g00360 . Bma02g00245 . . . . . Car04g02239 Car15g00666 Cpe01g02014 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006627 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00739 Cmo_Chr15 FPKM 11.799105 12.914027 27.088917 29.420166 4.162375 4.649025 4.074732 16.255945 16.421898 17.170399