Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00753 ATGGATTCGAATGAGGAGGAATATAATGTGGAAACCGTTCGCGAACGGATCGCGTCGTCGCGAGCGAGCCGACTGGACCTGGTTCAGAAAGAGTTGAGTATGCAATCGGGTCGCAGAAGATTTAGCCGCGAAAATATCATCAATGGCATTAAAGGCCTCATTATCCATCCTGACAGCAGGTGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTATTCTTCCTTCTTCACACCCATGGAATTCGCGTTCTTCAGGGGATTACCAGATAATCTATTTATACTTGACATTGTTGGACAGATTGCTTTCCTCGTTGACATTGTTTTCCAGTTCTTCCTTGCGTACAGAGATAGTCAGACATACCTAATGGTCTATAAGCACACTCCAATAGCACTCAAGTACTTGAAGTCCACTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGACCTCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATGCCTTCTATGGATAAGGCTATTTCGGGTGCGGAAAGTCACCGATTTTTTTCAGAGGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTGAAGCTCATTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACCACTCTTCCTCCTACCGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTGGGGGACTACAGTTACTCACATTTCAGGGATATTGATCTATGGAAACGATACACCACATCTTTATACTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACCTGAGGGAAATGATATTCGTTATGATTTATGTATCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCGTTGATTGTAAAAGGGTCCAAGACGGTGAAATTCAGGGATAAAATGACAGATATAATGAAATACATGAACAGAAATAGACTTAGCAGGGACATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTATACTGAAGCTTCTGTTCTACAGGACATCCCAATATCGATCCGTGCTAAGATTTCCCAAACATTATACTTGCCTTGCATTCAGAACGTCGCTATCTTTAAAGGATGCTCTCCAGAGTTTATCAACCAAATAGTTATTAGACTGCATGAAGAGTTCTTTCTGCCTGGAGAGGTGATAATGGAACCAGGAAATGTGGTCGATCAACTTTATTTTGTCTCTCATGGTGTGCTGGAGGAAGTGGGCATAGCACAAGATGGTTCAGAAGAAACCATAGATTTACTAGAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCCTATACAGTTCGAGTGTGTGAATTATGTAGACTACTACGCCTTGACAAGCAGTCCTTCACAAATATCCTTGACATATACTTCTACGACGGCAGGAAAATCTTGAACAATCTTCTTGAGGGAAGAGAAACGAGCCTCCGAATTAAGCAAATGGAATCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTGAAGGTGAACAGTGCCGCATATCATGGAGATCTGTACCAATTGAAAGGTCTGGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGATGATATAGTAGTTTTCCTAATTCAGGAAGGAGTAGACATTGATCTTACAGATAATTTTGGCAATACGCCATTGATGGAAGCCATCAAGAATGGGAACGATCATGTCGCTGAGTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTCTGTGCAGCAGTTTCAAGGGGTGATGCAGATCTTATTAAGAGATTATTGCTCTATGGCATTGACCCCAACACCAAAGATTACGATTTCAGAACTCCGCTACATATAGCTGCCTCTTCTGGGCTAACTTTGATGGCAAAGTTGCTTTTAGAATATGGGGACAGAAAATACTCGAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTGAAGAAAATAGAAAGCCTGGAATCGTCCTATGGGTTCCATACACAATTGAAGAGCTCATCAAAGTATCATCAGATCAGCTTCTAGTTTCAGGTGAATGTTGTCTATTATCAGAAGATGGAGGTAAAATTCTTGATATCCATATGGTTGATGAAGGTCAAAAGCTGTATCTAGTTCCTGAAACTGGTTAA 2286 41.64 MDSNEEEYNVETVRERIASSRASRLDLVQKELSMQSGRRRFSRENIINGIKGLIIHPDSRWYRAWTKFILIWAVYSSFFTPMEFAFFRGLPDNLFILDIVGQIAFLVDIVFQFFLAYRDSQTYLMVYKHTPIALKYLKSTFVTDFLSCMPWDLIYKACGKREEVRCLLWIRLFRVRKVTDFFQRMEKDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPTEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDIMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPCIQNVAIFKGCSPEFINQIVIRLHEEFFLPGEVIMEPGNVVDQLYFVSHGVLEEVGIAQDGSEETIDLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGRETSLRIKQMESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFDDIVVFLIQEGVDIDLTDNFGNTPLMEAIKNGNDHVAELLSKEGASLKVENAGSFLCAAVSRGDADLIKRLLLYGIDPNTKDYDFRTPLHIAASSGLTLMAKLLLEYGDRKYSKKCTVFPFHPWDPEENRKPGIVLWVPYTIEELIKVSSDQLLVSGECCLLSEDGGKILDIHMVDEGQKLYLVPETG 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3699749 3706301 - CmoCh15G007530.1 Cmo15g00753 398261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00753 761 SUPERFAMILY Voltage-gated potassium channels 56 308 - -
Cmo15g00753 761 Pfam Ion transport protein 63 308 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo15g00753 761 CDD CAP_ED 383 497 IPR000595 -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat region circular profile. 560 592 - -
Cmo15g00753 761 Pfam KHA, dimerisation domain of potassium ion channel 687 756 IPR021789 -
Cmo15g00753 761 Pfam Cyclic nucleotide-binding domain 403 487 IPR000595 -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Cmo15g00753 761 Gene3D Jelly Rolls 367 506 IPR014710 -
Cmo15g00753 761 ProSiteProfiles cAMP/cGMP binding motif profile. 383 503 IPR000595 -
Cmo15g00753 761 PANTHER POTASSIUM CHANNEL AKT1 681 760 IPR045319 GO:0005249|GO:0006813
Cmo15g00753 761 Gene3D Helix hairpin bin 310 366 - -
Cmo15g00753 761 PANTHER POTASSIUM CHANNEL SKOR-LIKE 681 760 - -
Cmo15g00753 761 SUPERFAMILY Ankyrin repeat 533 682 IPR036770 -
Cmo15g00753 761 SMART cnmp_10 383 501 IPR000595 -
Cmo15g00753 761 Pfam Ankyrin repeats (3 copies) 535 622 IPR002110 GO:0005515
Cmo15g00753 761 SUPERFAMILY cAMP-binding domain-like 311 501 IPR018490 -
Cmo15g00753 761 Pfam Ankyrin repeats (many copies) 629 677 IPR002110 GO:0005515
Cmo15g00753 761 SMART ANK_2a 560 589 IPR002110 GO:0005515
Cmo15g00753 761 SMART ANK_2a 657 686 IPR002110 GO:0005515
Cmo15g00753 761 SMART ANK_2a 593 622 IPR002110 GO:0005515
Cmo15g00753 761 SMART ANK_2a 624 653 IPR002110 GO:0005515
Cmo15g00753 761 ProSiteProfiles KHA domain profile. 688 761 IPR021789 -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Cmo15g00753 761 Gene3D - 65 309 - -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat region circular profile. 657 681 - -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat profile. 657 681 IPR002110 GO:0005515
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Cmo15g00753 761 PANTHER POTASSIUM CHANNEL SKOR-LIKE 3 687 - -
Cmo15g00753 761 PRINTS EAG/ELK/ERG potassium channel family signature 207 217 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo15g00753 761 PRINTS EAG/ELK/ERG potassium channel family signature 299 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo15g00753 761 PRINTS EAG/ELK/ERG potassium channel family signature 255 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo15g00753 761 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo15g00753 761 PANTHER POTASSIUM CHANNEL AKT1 3 687 IPR045319 GO:0005249|GO:0006813
Cmo15g00753 761 Gene3D - 529 693 IPR036770 -
Cmo15g00753 761 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00951 Cmo-Chr6:7368874 Cmo15g00753 Cmo-Chr15:3699749 2.66E-11 dispersed
Cmo14g01556 Cmo-Chr14:12418783 Cmo15g00753 Cmo-Chr15:3699749 6.13E-10 dispersed
Cmo15g00753 Cmo-Chr15:3699749 Cmo11g00553 Cmo-Chr11:2690138 7.15E-08 dispersed
Cmo15g00753 Cmo-Chr15:3699749 Cmo04g02411 Cmo-Chr4:17941080 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00753 K21867 - csv:101210912 1331.62