Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00783 ATGGAGATGGACAAGAACCAGCCTGAGAATCAACACCTTCTTCAAGAGACCACTAGCTTCACTACCAATGGTGATGCCCCCCGATTGGACGGCGCTGATGATGCCGATGTTACTGTTCCTGATCCTGATGCTGCTGTAGGAACCGACGACGATGTAAAATCTGCCGAGAAATTGGAGAATCAGGAGGAGGGGGAGGAGACGCAAAAGGAGGAGGAGGAGAAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAAGAAGGAGGATGAACCGGATCTTCATTATAATCTCCATACGATTCTTGCGGATGTCGATCAGTTTCTGTTAACTCCTCACGGTTCTCGTGATCGAGAGGAAGATTCCACTGTTGAGATTCCGCACTTCATTGACAAATTCTTGGATCTTGTGGATGCGAAGATTGAGCAATACAATAACGCGGAATCGAATGCGAAGGAGAACCAGTGTCGAGTGCCGGAAGATGAGTCGTCGTTTCTCGAAGCGGTTGATCGGATATCGAAGCTGAACACTGCGATTCACGAAATGAAATTGGAAGAGGAGAAGAATTCGTTGATCAATCGCATAGGGAGTACTCAACAGCGAGCGATTTCTTATTTAGAAGAAGAGTTCAGGTTCTTTCTCGAGGAATCCAAAAATAGAGATGTGGATGTTGACGATACGAAAGGAGATCGTTGTGGAGTACCAGAAGCTGAACCCGATCATCAACAGATTCCAGTTTACTCCAACGAGATCTTGAGCTATTTGAAAAAAATCGCCAATCAAATGATTTCCGGTGGATACGAATCGGAATGCTACCATGTCTACATCGTTGCGAGAAGAAACAAATTCGAAGAGGCCTTGTTGAACCTAGGGTTCGAGAAACACAGCATCGATGATATCCAGAAGATGAGCTGGGAATCAATGGAGTGTGAGATCGGCACATGGATCAGAACCTTCGAGCAATGCACCATCGTTTTGTTCTCTGGCGAACGGAATCTCGCCGAATCTATATTTTCAGCGCATCCTAAGATTTCCGCCAATCTGTTCAACAACCTAACTCACGGCATTGTGATTCAACTGCTAAATTTCTCAGAAGGTGTTGCAATGACGAAACGCTCCGCCGAGAAGTTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGCGATATGCTCCCAAAAATGGAAAGCTTATTTCCAGAAGAATACGCCGATGAGCTCAGAACAGAGATCGCAACCACTCGAACTCGTCTAGGCGAAGCGGCGATATGCATATTTTGCGATCTCGAAAACTCGATCAGAGCGGACACCGGAAAAATCCCGGTACCAGGCGGCGCCGTTCATCCATTGGCTCGATACACCATTAACTACTTGAAATACGCTTGCGAGTACAGAACCACACTGGAACAGATATTCAAAGAACACGCAAAGATCGAGCGAGCCGATTCAACAAGTCGACCACGTTACGAAGGCGAACAAGCACCGACTTACAACCCTAACTCTGACAATCAATCACCATTCTCCGTGGAACTGATGCGGGTAATGGAGCTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGACATAGCACTGAGTTCGATTTTCATGATGAACAACGGTCGATACATCTTGCAGAAGATCAAAGGATCTCCAGATATCCACGAACTGGTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATCTTCGTCAATACCACAAGAACTACCAGAGAGAGACGTGGGGGAAATTATTGGGTTATTTGAACCACGAGGGCTTGACCTGGCACGGGAAAGTGAATAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCCCTGTTCGAAGAGATTCACAAAACACAAAGCTCGTGGATCATAAGCGACGAACAGCTCCAGTCGGAGCTCCGAGTATCAATATCGGCGGTGATGATTCCGGCGTACAGATCATTCCTGGCTAGGTTTTCGCAGTACCTGGATCCGGGGAGACAAACAGAGAAATACATTAAGCTTCAGCCTGAAGACATAGAAACCTACATAGATGAACTATTCGACGGGAATCCAACCTCCATGGCAAGAAGGAGAACATAA 2097 46.64 MEMDKNQPENQHLLQETTSFTTNGDAPRLDGADDADVTVPDPDAAVGTDDDVKSAEKLENQEEGEETQKEEEEKEKEEEEEEEEEEKKEDEPDLHYNLHTILADVDQFLLTPHGSRDREEDSTVEIPHFIDKFLDLVDAKIEQYNNAESNAKENQCRVPEDESSFLEAVDRISKLNTAIHEMKLEEEKNSLINRIGSTQQRAISYLEEEFRFFLEESKNRDVDVDDTKGDRCGVPEAEPDHQQIPVYSNEILSYLKKIANQMISGGYESECYHVYIVARRNKFEEALLNLGFEKHSIDDIQKMSWESMECEIGTWIRTFEQCTIVLFSGERNLAESIFSAHPKISANLFNNLTHGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMLPKMESLFPEEYADELRTEIATTRTRLGEAAICIFCDLENSIRADTGKIPVPGGAVHPLARYTINYLKYACEYRTTLEQIFKEHAKIERADSTSRPRYEGEQAPTYNPNSDNQSPFSVELMRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSPDIHELVGDTWYRKRSSDLRQYHKNYQRETWGKLLGYLNHEGLTWHGKVNKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKLQPEDIETYIDELFDGNPTSMARRRT 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3851042 3853138 + CmoCh15G007830.1 Cmo15g00783 398291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00783 698 Coils Coil 55 91 - -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 10 25 - -
Cmo15g00783 698 SUPERFAMILY Cullin repeat-like 159 687 IPR016159 -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 65 89 - -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 1 94 - -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 488 503 - -
Cmo15g00783 698 Coils Coil 134 154 - -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 46 64 - -
Cmo15g00783 698 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 80 697 - -
Cmo15g00783 698 MobiDBLite consensus disorder prediction 481 503 - -
Cmo15g00783 698 Pfam Exo70 exocyst complex subunit 314 684 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo15g00783 698 Gene3D Exocyst complex component Exo70 140 696 - -
Cmo15g00783 698 PANTHER EXOCYST COMPLEX PROTEIN EXO70 80 697 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00783 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206040 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01668 Cmo-Chr6:11548220 Cmo15g00783 Cmo-Chr15:3851042 0 dispersed
Cmo14g01484 Cmo-Chr14:11958809 Cmo15g00783 Cmo-Chr15:3851042 0 dispersed
Cmo15g00783 Cmo-Chr15:3851042 Cmo13g00835 Cmo-Chr13:7754168 8.57E-111 dispersed
Cmo15g00783 Cmo-Chr15:3851042 Cmo04g02383 Cmo-Chr4:17768187 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00956 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.2e-285 979.5
Cmo04g01515 . 10 651 EXO70 exocyst subunit family AT5G03540 74.9 2.0e-277 952.2
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G03540 68.5 4.1e-254 874.8
Cmo07g00855 CST 95 737 EXO70 exocyst subunit family AT5G03540 58.1 5.6e-195 678.3
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G52340 76.3 2.3e-283 971.8
Cmo18g00956 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 1.3e-270 929.5
Cmo04g01515 . 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.9e-269 925.6
Cmo07g00855 CST 94 737 EXO70 exocyst subunit family AT5G52340 61.0 1.6e-212 736.5
Cmo03g01110 CST 145 629 EXO70 exocyst subunit family AT5G52350 61.9 7.9e-169 591.3
Cmo04g01515 . 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.8e-166 582.0
Cmo18g00956 . 147 653 EXO70 exocyst subunit family AT5G52350 59.1 4.8e-166 582.0
Cmo13g00020 . 1 626 EXO70 exocyst subunit family AT5G58430 65.3 1.8e-240 829.3
Cmo01g00735 . 1 624 EXO70 exocyst subunit family AT5G58430 65.4 5.4e-240 827.8
Cmo13g00020 . 1 625 EXO70 exocyst subunit family AT1G07000 51.9 6.4e-174 608.2
Cmo01g00735 . 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.7e-172 602.8
Cmo06g01668 . 58 671 EXO70 exocyst subunit family AT5G13150 51.7 5.7e-168 588.6
Cmo14g01484 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 8.3e-167 584.7
Cmo04g02383 . 77 673 EXO70 exocyst subunit family AT5G13990 54.3 1.4e-185 647.1
Cmo15g00783 . 92 698 EXO70 exocyst subunit family AT5G13990 53.1 1.0e-183 641.0
Cmo14g01223 CCT,ECH 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.9e-213 739.6
Cmo01g00011 . 12 596 EXO70 exocyst subunit family AT1G72470 61.7 3.9e-198 688.7
Cmo14g01223 CCT,ECH 12 609 EXO70 exocyst subunit family AT1G54090 62.1 3.2e-208 722.2
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT1G54090 59.2 4.9e-193 671.8
Cmo14g01223 CCT,ECH 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.9e-217 752.3
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT3G14090 60.5 1.1e-200 697.2
Cmo11g00037 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.0 3.3e-227 785.4
Cmo10g00061 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.8e-226 782.3
Cmo13g00835 CCT 19 657 EXO70 exocyst subunit family AT5G50380 62.1 6.3e-226 781.2
Cmo05g00650 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 1.5e-291 999.2
Cmo12g00250 CST 15 682 EXO70 exocyst subunit family AT4G31540 73.1 1.9e-291 998.8
Cmo04g01289 . 40 587 EXO70 exocyst subunit family AT3G55150 51.1 2.2e-148 523.5
Cmo20g00472 CST 471 976 EXO70 exocyst subunit family AT3G55150 50.2 6.7e-129 458.8
Cmo04g00251 . 27 602 EXO70 exocyst subunit family AT2G39380 50.3 1.4e-150 530.8
Cmo04g01289 . 42 587 EXO70 exocyst subunit family AT2G39380 52.2 2.6e-149 526.6
Cmo14g00163 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 2.4e-179 626.3
Cmo20g00472 CST 1 460 EXO70 exocyst subunit family AT3G09520 50.5 2.8e-127 453.4
Cmo20g00472 CST 473 978 EXO70 exocyst subunit family AT5G59730 51.5 9.2e-139 491.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00783 Cmo_Chr15 FPKM 9.797433 8.745296 0.0 0.0 0.911737 1.06585 0.913843 0.694566 0.294509 0.475362