Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00790 ATGGTTTTGTCCAAGACTGTTTCACAGACGGATGTCTCCGTCCACTCTACCTTCGCTTCACGATATGTACGAACCTCTCTCCCGAGATTCAAAATGCCGGAGAATTCGATCCCTAAGGAGGCTGCGTTTCAGATCATTAATGATGAGCTCATGCTCGATGGAAACCCTAGGCTGAATTTGGCATCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCTATTAACAAGAATTACGTTGATATGGATGAATATCCCGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAATCCGAGACGGCGGTGGGAGTCGGAACCGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAAAATGAAGGCTGCAGGCAAGCCCTATGACAACCCCAACATCGTCACTGGAGCCAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGCGAAGGTTACTACGTGATGGATCCACAGAAAGCTGTGGAGTTGGTTGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAATGATCTCTTAATCGAGAAGAACAAGGAAACTGGATGGGATACCCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTAGAATGGGATTTTAGGCTGCCCCTTGTTAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGCTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGATCTAGCCAAGTTATTGCTCAGTATTACCAAATGATCCGGTTGGGTTATGAGGGATACCAAAACGTGATGGAAAATTGCAGAGAGAACATGTTGGTTCTAAAGGAAGGACTCGAAAAAACGGGTCGTTTCAACATCGTGTCGAAGGACAATGGAGTCCCACTTGTGGCCTTCTCCTTGAAAGATAGCAGTCGTCATACAGAGTTTGAGGTCTCAGAAATGCTTAGGAGATTCGGTTGGATTGTGCCTGCCTACACCATGCCTCCAGATGCACAACACATAACAGTCCTAAGAGTTGTGATCCGAGAAGACTTTTCTCGCACACTTGCGGAGCGTCTAGTGGCAGATATTGAGAAAACGATGCACGAGCTCGACATCCTCCCGTCGAAGGCCGATATCAAGAACACGGTGGCGAAGAAGAGCGAACTCGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGAACAAGAAGAAGACTAATGGAGTTTGTTAA 1464 46.45 MVLSKTVSQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQMIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKTMHELDILPSKADIKNTVAKKSELETQREITTVWRKFVMNKKKTNGVC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3875072 3881355 - CmoCh15G007900.1 Cmo15g00790 398298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00790 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo15g00790 487 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cmo15g00790 487 CDD DOPA_deC_like 59 439 - -
Cmo15g00790 487 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo15g00790 487 Gene3D - 361 448 - -
Cmo15g00790 487 Gene3D - 66 360 IPR015421 GO:0003824
Cmo15g00790 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
Cmo15g00790 487 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo15g00790 487 Gene3D - 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00788 Cmo-Chr1:4138177 Cmo15g00790 Cmo-Chr15:3875072 0 dispersed
Cmo04g02255 Cmo-Chr4:16877971 Cmo15g00790 Cmo-Chr15:3875072 0 dispersed
Cmo04g02258 Cmo-Chr4:16884100 Cmo15g00790 Cmo-Chr15:3875072 0 dispersed
Cmo08g00169 Cmo-Chr8:966664 Cmo15g00790 Cmo-Chr15:3875072 2.13E-12 dispersed
Cmo15g00790 Cmo-Chr15:3875072 Cmo15g00908 Cmo-Chr15:4596553 0 dispersed
Cmo15g00790 Cmo-Chr15:3875072 Cmo04g02380 Cmo-Chr4:17741623 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00790 K01580 - csv:101216119 934.865