Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00807 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCGACGACGAACAAAGAAGTTGATGGACACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAATGTTACAATGCATGCAGATGTGGAAACGGATGAAGTGTATGCCCAGATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCGAGTGATACAAGCACCCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGTCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAGTATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGACGAGTCAGCAGCTGGGGAGAGACAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACGTTTCCTATGTATCCGTCTCTTTTTCCACTTCGGTTGAAACGTCCATGGCATCCTGGAGTCTCCTCTGTTCATGATGAACTGATTTTGGTTTACTGGTTGGAGTATAACAGAGATGATGCTTCTAATGGCTTAATGTGGCTTCGGGGAGGAGTCGGGGATCAAGGTCTACACTCACTGAATTTGCAATCCATGGGCTCACTGCCGTGGTTGCAGCAGAGACTCGATTCTCCCATGTTCGGAAATGATCATAATCAGCAGTATCAAGCCATGTTAGCTGCTGGAATGCCGAACCTTGGAGGCGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTTAAGACACCAAGCCAAGTTATGGCAGAGAATATACCCCAACACATTCTCCAGCAAACTCCACAAAATCAATCAGAGGATATTCCAAACCAGCAGCAGCGTACTTATCATGAAACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGAAAATTCAAATGTGCCATCACCCCCATTTCCCAGGACAGAGCTTATGGATTCGAACACAAATTACTCCGAATCCATGATCTCTAGAAGAAATATACTTGCTTCATCGTGTGCTGAAGGGACGGGAAATCTTTCCAATATCTATAGAAGTGGGCAGTCGATCCTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATCCACAGGTTGATGCTCACTCGAACTCGATGACATTTCCTCCACCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCGTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCAATGGGAGATTCTGGATTTCAGAATTCTATGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCGGGGCAAGTTGATCCATTGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGTTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGGATCGAGGGACAGTTGGTAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCTGGTATATCAAGATACTCTCTCCCCAGGACTTTCAGAAACTAGGGGTTCAGGCAATTGAGTCCTTCAACCCCGTCGGTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGAAAATGTTTCAGGGCTTCCGTCTGTCGGTTCGCTAGAATATTGA 2562 45.82 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESAAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDELILVYWLEYNRDDASNGLMWLRGGVGDQGLHSLNLQSMGSLPWLQQRLDSPMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQQQQQLVQQSMPQNILKTPSQVMAENIPQHILQQTPQNQSEDIPNQQQRTYHETLQVQSNQFHQGENSNVPSPPFPRTELMDSNTNYSESMISRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHPQVDAHSNSMTFPPPFSGRDSILELGNCNSDSPSRTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPMGDSGFQNSMYSCVQDSSELLHSSGQVDPLNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLVDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGVQAIESFNPVGGQRLTSGGNEAENVSGLPSVGSLEY 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3977365 3994051 + CmoCh15G008070.1 Cmo15g00807 398315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00807 853 Gene3D - 724 817 - -
Cmo15g00807 853 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Cmo15g00807 853 Gene3D - 292 364 - -
Cmo15g00807 853 MobiDBLite consensus disorder prediction 832 853 - -
Cmo15g00807 853 Gene3D - 126 230 IPR015300 -
Cmo15g00807 853 PANTHER AUXIN RESPONSE FACTOR 8 1 827 - -
Cmo15g00807 853 Pfam AUX/IAA family 725 812 IPR033389 -
Cmo15g00807 853 ProSiteProfiles PB1 domain profile. 728 813 IPR000270 GO:0005515
Cmo15g00807 853 MobiDBLite consensus disorder prediction 614 643 - -
Cmo15g00807 853 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Cmo15g00807 853 CDD B3_DNA 127 228 IPR003340 GO:0003677
Cmo15g00807 853 SMART B3_2 128 230 IPR003340 GO:0003677
Cmo15g00807 853 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo15g00807 853 SUPERFAMILY CAD & PB1 domains 721 802 - -
Cmo15g00807 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 827 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo15g00807 853 MobiDBLite consensus disorder prediction 614 640 - -
Cmo15g00807 853 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01425 Cmo-Chr3:10309688 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo07g00080 Cmo-Chr7:500794 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo09g00115 Cmo-Chr9:540845 Cmo15g00807 Cmo-Chr15:3977365 1.29E-28 dispersed
Cmo12g01366 Cmo-Chr12:11717942 Cmo15g00807 Cmo-Chr15:3977365 7.24E-29 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo18g00468 Cmo-Chr18:3127927 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo15g00807 Cmo-Chr15:3977365 Cmo04g02359 Cmo-Chr4:17596031 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11172 PF02309 AUX_IAA 9.70E-08 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00807 - - csv:101208098 1582.0