Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00809 ATGCCCTTTTTGGACTACCAACCTCCTCCTCCGCCGCCGCCGCCGCCGCCTCCACGCGATCTCGCCGCCGCTGTTCAGGCTGCTTCTCTCCACCGCAAGAAGCGGATGTCGAGACACCGCCGCCGATCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTGCCCTTCTGCCTCCGCCGCCACGGGTGATTGATCCAAGGAGGCTCAAGTTTCTTTTTGAGAAAGAGCTTAAGAACAGTGATGTTAGCTCTCTAAGAAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGACTCCAAAGAAGGAATTATAATTACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTTGTCAATGCTCATGGCTTACAACTAGGAGATTTCATCATGGTTTATCAAGATTATGAAAACCTCAACTATGTGATTCAGGCAAAGAAGGCTTCTGATCAAGAAATGTATACCGGCATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGCCTAGTCCAACGATGGATGTGTCATCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAGTGACTAACTACTCGAGAATGGGAGGTAGAAAGCTACACGTGATTATGAAAAGCTACTCGTGGAACAATAAACATGGAAAGCTACTAGCTGTTTCAGCTGGAAAGCTACACGTGGATAGTGATTATGAAGAGCTACTCGTGGACAGGTTTTGCGCCACGTTAATGGCGGAAACTGCCAGTAGTAGAGAGGAGACTGCATTCGATGCGAAGCGCAAACCTGCTGATCCCTGCTGCGAAGCGAAAGAGGAGCGTTCGAACAAGATTCAGAAGCTTGAAGTGGTTGAGGGCGAACCCTGTAATGATGTAAAGAAGAATGGTGACAATGGAGACCATAAGCAAGGTGATGACCAGATTGATAACATTTCTTCGGCTGCGGAAGGGAAAGATGATGGAGTTCTTGCAGCTGATGTAGATGCGGGGGACGAGGGAGAGGATGACGATGATGAAGACGACTGTGAGAACGGTGAAAAGTCGAGTGGGAAAGCGGCTAAGGAGGATCGTAAGGGGAAGGGTATCATGAAGGATGACAAAGGAAAAGGGAAATTGATAGAGGAAGACGACGACGACGACGACGATGAAGATTCCAGTGATGATGGAAGCGAATTTGACAATGAAGAAAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATCTGGACAACATCCTTCCTTCTAGGACGCGGAGGCGAACGGTTCACCCTGGAGTGTATTTTGCTACGGATCTTGGTAACGAAGACGATGATAGCAGCGACAGCGATGCTTGA 1488 47.31 MPFLDYQPPPPPPPPPPPRDLAAAVQAASLHRKKRMSRHRRRSSSNLHFSFPSSSAALLPPPPRVIDPRRLKFLFEKELKNSDVSSLRRMILPKKAAETHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVPSPTMDVSSFIYDTSSAFDNDSTFDFMSGSVTNYSRMGGRKLHVIMKSYSWNNKHGKLLAVSAGKLHVDSDYEELLVDRFCATLMAETASSREETAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEPCNDVKKNGDNGDHKQGDDQIDNISSAAEGKDDGVLAADVDAGDEGEDDDDEDDCENGEKSSGKAAKEDRKGKGIMKDDKGKGKLIEEDDDDDDDEDSSDDGSEFDNEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNEDDDSSDSDA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4009382 4013230 + CmoCh15G008090.1 Cmo15g00809 398317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00809 495 ProSiteProfiles B3 DNA-binding domain profile. 75 177 IPR003340 GO:0003677
Cmo15g00809 495 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 249 IPR044800 GO:0003700
Cmo15g00809 495 SUPERFAMILY DNA-binding pseudobarrel domain 73 171 IPR015300 -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 304 327 - -
Cmo15g00809 495 Gene3D - 71 185 IPR015300 -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 1 48 - -
Cmo15g00809 495 SUPERFAMILY Formin homology 2 domain (FH2 domain) 8 18 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 339 358 - -
Cmo15g00809 495 Pfam B3 DNA binding domain 75 173 IPR003340 GO:0003677
Cmo15g00809 495 MobiDBLite consensus disorder prediction 303 327 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 339 495 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 395 425 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 31 45 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 1 21 - -
Cmo15g00809 495 CDD B3_DNA 73 175 IPR003340 GO:0003677
Cmo15g00809 495 SMART B3_2 75 177 IPR003340 GO:0003677
Cmo15g00809 495 MobiDBLite consensus disorder prediction 377 394 - -
Cmo15g00809 495 MobiDBLite consensus disorder prediction 426 456 - -
Cmo15g00809 495 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 28 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00181 Cmo-Chr6:988351 Cmo15g00809 Cmo-Chr15:4009382 9.36E-18 dispersed
Cmo07g00264 Cmo-Chr7:1294037 Cmo15g00809 Cmo-Chr15:4009382 1.27E-19 dispersed
Cmo08g00060 Cmo-Chr8:360890 Cmo15g00809 Cmo-Chr15:4009382 1.34E-34 dispersed
Cmo15g00809 Cmo-Chr15:4009382 Cmo17g01215 Cmo-Chr17:9708753 3.06E-35 dispersed
Cmo04g02357 Cmo-Chr4:17573407 Cmo15g00809 Cmo-Chr15:4009382 7.51E-117 transposed
Cmo15g00809 Cmo-Chr15:4009382 Cmo04g02356 Cmo-Chr4:17571414 1.41E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11174 PF02362 B3 3.10E-17 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00809 - - csv:101222512 317.775