Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00809 | ATGCCCTTTTTGGACTACCAACCTCCTCCTCCGCCGCCGCCGCCGCCGCCTCCACGCGATCTCGCCGCCGCTGTTCAGGCTGCTTCTCTCCACCGCAAGAAGCGGATGTCGAGACACCGCCGCCGATCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTGCCCTTCTGCCTCCGCCGCCACGGGTGATTGATCCAAGGAGGCTCAAGTTTCTTTTTGAGAAAGAGCTTAAGAACAGTGATGTTAGCTCTCTAAGAAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGACTCCAAAGAAGGAATTATAATTACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTTGTCAATGCTCATGGCTTACAACTAGGAGATTTCATCATGGTTTATCAAGATTATGAAAACCTCAACTATGTGATTCAGGCAAAGAAGGCTTCTGATCAAGAAATGTATACCGGCATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGCCTAGTCCAACGATGGATGTGTCATCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAGTGACTAACTACTCGAGAATGGGAGGTAGAAAGCTACACGTGATTATGAAAAGCTACTCGTGGAACAATAAACATGGAAAGCTACTAGCTGTTTCAGCTGGAAAGCTACACGTGGATAGTGATTATGAAGAGCTACTCGTGGACAGGTTTTGCGCCACGTTAATGGCGGAAACTGCCAGTAGTAGAGAGGAGACTGCATTCGATGCGAAGCGCAAACCTGCTGATCCCTGCTGCGAAGCGAAAGAGGAGCGTTCGAACAAGATTCAGAAGCTTGAAGTGGTTGAGGGCGAACCCTGTAATGATGTAAAGAAGAATGGTGACAATGGAGACCATAAGCAAGGTGATGACCAGATTGATAACATTTCTTCGGCTGCGGAAGGGAAAGATGATGGAGTTCTTGCAGCTGATGTAGATGCGGGGGACGAGGGAGAGGATGACGATGATGAAGACGACTGTGAGAACGGTGAAAAGTCGAGTGGGAAAGCGGCTAAGGAGGATCGTAAGGGGAAGGGTATCATGAAGGATGACAAAGGAAAAGGGAAATTGATAGAGGAAGACGACGACGACGACGACGATGAAGATTCCAGTGATGATGGAAGCGAATTTGACAATGAAGAAAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATCTGGACAACATCCTTCCTTCTAGGACGCGGAGGCGAACGGTTCACCCTGGAGTGTATTTTGCTACGGATCTTGGTAACGAAGACGATGATAGCAGCGACAGCGATGCTTGA | 1488 | 47.31 | MPFLDYQPPPPPPPPPPPRDLAAAVQAASLHRKKRMSRHRRRSSSNLHFSFPSSSAALLPPPPRVIDPRRLKFLFEKELKNSDVSSLRRMILPKKAAETHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVPSPTMDVSSFIYDTSSAFDNDSTFDFMSGSVTNYSRMGGRKLHVIMKSYSWNNKHGKLLAVSAGKLHVDSDYEELLVDRFCATLMAETASSREETAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEPCNDVKKNGDNGDHKQGDDQIDNISSAAEGKDDGVLAADVDAGDEGEDDDDEDDCENGEKSSGKAAKEDRKGKGIMKDDKGKGKLIEEDDDDDDDEDSSDDGSEFDNEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNEDDDSSDSDA | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 4009382 | 4013230 | + | CmoCh15G008090.1 | Cmo15g00809 | 398317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00809 | 495 | ProSiteProfiles | B3 DNA-binding domain profile. | 75 | 177 | IPR003340 | GO:0003677 | |
Cmo15g00809 | 495 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 28 | 249 | IPR044800 | GO:0003700 | |
Cmo15g00809 | 495 | SUPERFAMILY | DNA-binding pseudobarrel domain | 73 | 171 | IPR015300 | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 304 | 327 | - | - | |
Cmo15g00809 | 495 | Gene3D | - | 71 | 185 | IPR015300 | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cmo15g00809 | 495 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 8 | 18 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 339 | 358 | - | - | |
Cmo15g00809 | 495 | Pfam | B3 DNA binding domain | 75 | 173 | IPR003340 | GO:0003677 | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 303 | 327 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 339 | 495 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 395 | 425 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo15g00809 | 495 | CDD | B3_DNA | 73 | 175 | IPR003340 | GO:0003677 | |
Cmo15g00809 | 495 | SMART | B3_2 | 75 | 177 | IPR003340 | GO:0003677 | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 377 | 394 | - | - | |
Cmo15g00809 | 495 | MobiDBLite | consensus disorder prediction | 426 | 456 | - | - | |
Cmo15g00809 | 495 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 | 28 | 249 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00181 | Cmo-Chr6:988351 | Cmo15g00809 | Cmo-Chr15:4009382 | 9.36E-18 | dispersed | |
Cmo07g00264 | Cmo-Chr7:1294037 | Cmo15g00809 | Cmo-Chr15:4009382 | 1.27E-19 | dispersed | |
Cmo08g00060 | Cmo-Chr8:360890 | Cmo15g00809 | Cmo-Chr15:4009382 | 1.34E-34 | dispersed | |
Cmo15g00809 | Cmo-Chr15:4009382 | Cmo17g01215 | Cmo-Chr17:9708753 | 3.06E-35 | dispersed | |
Cmo04g02357 | Cmo-Chr4:17573407 | Cmo15g00809 | Cmo-Chr15:4009382 | 7.51E-117 | transposed | |
Cmo15g00809 | Cmo-Chr15:4009382 | Cmo04g02356 | Cmo-Chr4:17571414 | 1.41E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11174 | PF02362 | B3 | 3.10E-17 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00809 | - | - | csv:101222512 | 317.775 |