Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00812 ATGAGTGAGACGATGGAGAATTACTTGAGAAAGAACTTCGAGCTCGAGCCGAAGAGTCCGTCCGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATTGTCAAGAATCGCCGCCGGAGGTTTCGCATGGTTGCTGATCTCGATAAGCGAGCTCAGGCTGAGGAAAAGCGCAGGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTGCATTTCATTGATGCCGGGAAGCAAGGTGAATACAAGCTCTCCACAGAAGTAAGGGAAGCTGGTTTTGGAGTTGAACCTGATGTATTGGCATCCATGGTTCAAATCCACAATACCAAGAGTTTGTTACATTTCGGGGGCATTGGGGGATTGGCAAGAGAATTAAATGTTTCTCTGAAAGATGGAATTGCTACAAGTGAAGTAAGTTCAAGGCAGAGCACATACGGGATCAACCGTTACGTTGAGAAACCTTCAAGAGGGTTTTGGACGTTTGTGTGGGAAGCCCTGCATGATTTGACTCTCGTCATTCTCTTGGTTTCTGCCGTTGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATATTGAGTATCTTTCTCGTCGTGATAGTAACCGCAGTCAGTGACTATAATCAGTCCTTGCAATTTAAGGACTTGGAAAAACAGAAGAAAAATATTATTATTCAAGTTACTAGAGATGGATGCAGACAGAAGGTTTCTATTTATGATTTGGTGGTTGGAGATATTGTTCATTTATCTATTGGAGATCAAGTTCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCAATAGACGAATCAAGCTTGTCAGGTGAAAGTGAACCTGTAAATGTAGATGATAATAGGCCTTTCCTTCTAGCAGGGACGAAAGTTCAGGACGGGTCTGGTAAGATGCTAGTAGCCTCTGTTGGTATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACGCCACTTCAGGTAAAGCTTAACGGGGTTGCGACAATTATTGGAAAGGTCGGCTTGGTTTTTGCGGTCTTAACGTTTATAGTTCTGATCTCAAGATTTATTGTGCATAAAACATTACATAATGAGATTGGGCACTGGACATCCAAAGATGCATCGACGCTTCTGAATTACTTCGCCATTGCTGTAATTATAATTGTTGTTGCAGTTCCAGAAGGATTGCCTCTAGCCGTGACACTAAGTCTTGCCTTTGCCATGAAAAGGTTGATGAGGGATAAGGCACTTGTGAGGCATCTCTCCGCGTGTGAAACTATGGGTTCTGCAACCTGCATTTGCACCGATAAAACAGGTACATTAACAACGAACCATATGGTCGTCGACAAAATGTGGATTTGTGATGAAACGAGGACAATAAAAAATTCCAATGACGAAATTGCATTGAAATCCTCCGTAAATCAAACAGTATACAAGCTCCTTATACAATCTATTTTTCAAAATACCAGCTCCGAGGTAGTCAAAGGCAAAGATGGGAGGAACACCATTTTAGGTACTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTTTAGGTGGTGCTTTTGGATCATTGAATGATGATTATAAGGTAGTCAAAGTTGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCCGGTGGTGGCTTTCGAGCATTCTGCAAAGGAGCATCAGAAATCATTTTATCCATGTGTGGCAAGGTTCTCAGTTCTAATGGAGAACCATTGCTTCTTTCAGACGAAAAACGAACAAACATCTCGAATATCATCAATAGCTTCGCCAACGACGCTCTCAGAACTCTATGCATCGCTTATAAGGATATAACAGAAGTTTCTTCAGCACCAGACAGAATCCCAGATGATGATTTTACTTTAATAGCTGTTGTTGGCATTAAAGATCCTGTACGTCCTGGTGTAAGGGAAGCAGTTCAGGCTTGTTTGGCTGCTGGAATTACCGTAAGAATGGTAACTGGGGATAACATCAATACCGCTAAAGCCATAGCCAAAGAGTGTGGTATCTTGACAGATGGTGGTTTAGCCATAGAAGGGCCAGAATTCCGCAACAAAAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGTTCATCTCCTCTTGACAAGCACACCTTGGTCGGGCAGCTAAGGAGAACGTTCAAAGAAGTGGTGGCTGTCACAGGCGATGGCACTAATGATGCCCCTGCCTTGCACGAGGCCGACATTGGATTGGCCATGGGTATTGCAGGAACAGAGGTTGCCAAAGAAAACGCCGACGTAGTCATAATGGATGATAATTTCACAACCATTGTGAATGTTGCAAGATGGGGACGTGCAGTTTACATCAACATTCAGAAATTCGTACAGTTCCAGCTTACAGTCAACGTAGTCGCTCTCATGCTCAATTTCATATCCGCATGCGTTTCAGGTTCTGCTCCTCTCACCGCTGTTCAAATGCTATGGGTGAACTTAATAATGGACACACTTGGAGCTCTGGCATTGGCCACTGAGCCTCCCAATGAAGGGCTGATGAAACGAAAACCAATTGGGAGAAACGTCAGTATCATCACTGGGATCATGTGGAGGAACATCATCGGTCAGAGTATCTATCAAATCACTGTCTTATTAATCTTGAAATTCGAAGGAAAGCGCTTGTTGGATCTCACCGGTCCTGATTCGAGTATCGTTCTCGACACATTCATTTTCAACACGTTCGTGTTTTGCCAGGTGTTTAACGAAATAAACAGCCGTGACATGGAGCGCATAAACGTTTTCGGAGGGATATTTGGTAGTTGGGTGTTCATGGGAGTGATGGCATCCACGGTGGGTTTCCAGATCATAATAGTTGAATTCCTTGGGACATTCGCAGAAACAGTGGGATTAAACTGGAAGTTATGGGCAGCCAGCATCGTAATCGGAGCTATGAGTCTGCCAATAGCAATGGTGCTGAAATGCATTCCTGTTTCAAACTGCAAGGCCACATGCGAGTTCCACGATGGTTATGAGCCGCTCCCCACCGGTCCAGAATTGGCCTGA 3123 44.0 MSETMENYLRKNFELEPKSPSEEAQMRWRSAVSIVKNRRRRFRMVADLDKRAQAEEKRRKLQEKIRVALYVQKAALHFIDAGKQGEYKLSTEVREAGFGVEPDVLASMVQIHNTKSLLHFGGIGGLARELNVSLKDGIATSEVSSRQSTYGINRYVEKPSRGFWTFVWEALHDLTLVILLVSAVVSIGVGNATEGWPKGMYDGLGIILSIFLVVIVTAVSDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSIDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKVGLVFAVLTFIVLISRFIVHKTLHNEIGHWTSKDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMRDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICDETRTIKNSNDEIALKSSVNQTVYKLLIQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLGGAFGSLNDDYKVVKVEPFNSNRKKMSVLVALPGGGFRAFCKGASEIILSMCGKVLSSNGEPLLLSDEKRTNISNIINSFANDALRTLCIAYKDITEVSSAPDRIPDDDFTLIAVVGIKDPVRPGVREAVQACLAAGITVRMVTGDNINTAKAIAKECGILTDGGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRRTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVSIITGIMWRNIIGQSIYQITVLLILKFEGKRLLDLTGPDSSIVLDTFIFNTFVFCQVFNEINSRDMERINVFGGIFGSWVFMGVMASTVGFQIIIVEFLGTFAETVGLNWKLWAASIVIGAMSLPIAMVLKCIPVSNCKATCEFHDGYEPLPTGPELA 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4031016 4037511 - CmoCh15G008120.1 Cmo15g00812 398320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00812 1040 Gene3D - 20 81 - -
Cmo15g00812 1040 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo15g00812 1040 Pfam E1-E2 ATPase 240 433 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Cmo15g00812 1040 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Cmo15g00812 1040 SFLD p-type atpase 436 808 IPR044492 -
Cmo15g00812 1040 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cmo15g00812 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cmo15g00812 1040 SUPERFAMILY HAD-like 453 861 IPR036412 -
Cmo15g00812 1040 SFLD Haloacid Dehalogenase 436 808 - -
Cmo15g00812 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Cmo15g00812 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 726 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 551 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 518 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Cmo15g00812 1040 Gene3D - 137 337 - -
Cmo15g00812 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1018 IPR023298 -
Cmo15g00812 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 10 52 IPR024750 GO:0005516
Cmo15g00812 1040 Gene3D - 464 660 IPR023299 GO:0000166
Cmo15g00812 1040 Coils Coil 44 64 - -
Cmo15g00812 1040 SMART Cation_ATPase_N_a_2 119 191 IPR004014 -
Cmo15g00812 1040 PANTHER CATION TRANSPORTING ATPASE 7 1024 - -
Cmo15g00812 1040 CDD P-type_ATPase_Ca_PMCA-like 143 889 - -
Cmo15g00812 1040 Gene3D - 451 801 IPR023214 -
Cmo15g00812 1040 Gene3D - 169 1015 - -
Cmo15g00812 1040 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1024 - -
Cmo15g00812 1040 Pfam haloacid dehalogenase-like hydrolase 452 770 - -
Cmo15g00812 1040 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00812 1040 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01844 Cmo-Chr1:13443728 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo03g00953 Cmo-Chr3:7164857 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo07g00657 Cmo-Chr7:2953435 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo12g00924 Cmo-Chr12:8557941 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo14g00551 Cmo-Chr14:2801078 Cmo15g00812 Cmo-Chr15:4031016 8.41E-24 dispersed
Cmo14g00552 Cmo-Chr14:2805352 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo15g00812 Cmo-Chr15:4031016 Cmo09g00282 Cmo-Chr9:1251997 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00812 K01537 - csv:101203529 1835.85