Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00816 ATGTCTGGTTCTGACGGCGTCAACTGCAACAATGGCGCCATTATTGATCATTCTCAGACTACCAACAATGGCGGTTTGGCTGTCAAAAAACCTCCGTCCAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCGATCATTTGTGCTGCTCGGGTCTTCCAACTTACTCGCGAGTTGGGCCACAAATCCGACGGCCAAACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCTTCGATTATTGCTGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATTTCCGCTTCACTCCGCGGTGGTTCAGCTGCTGCTTCGTCTCTAGACCATAAGCCGCTTTTGGCTCCGGCGCCGTTCATTCTTGGCAAGCGCGTTAGAACGGACGACGATGGAGATAATAAAGACGACGGTAGCGGTGGCGGTGGCGGTGGTGGTGGCGTTTCGGTTGGCTCTACTGTGAGTTCGTTTATGGGTACGGCTGCCGCGGGTGGATATTGGGCGATTCCTACGAGGCCGGATTTCGGACAGGTGTGGAGCTTTGCAGCAGCAGCGGCGGCGGCTCCGGAGATGGTGATTCAACCGACCGCGGTTTCTCACCCGGCGTCGCTGTTCGTTCAACAGCAATCGATGGGAGAAGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCCGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCACCGTTGA 762 57.09 MSGSDGVNCNNGAIIDHSQTTNNGGLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGSAAASSLDHKPLLAPAPFILGKRVRTDDDGDNKDDGSGGGGGGGGVSVGSTVSSFMGTAAAGGYWAIPTRPDFGQVWSFAAAAAAAPEMVIQPTAVSHPASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4063640 4064401 + CmoCh15G008160.1 Cmo15g00816 398324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00816 253 MobiDBLite consensus disorder prediction 130 152 - -
Cmo15g00816 253 MobiDBLite consensus disorder prediction 30 45 - -
Cmo15g00816 253 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 250 - -
Cmo15g00816 253 MobiDBLite consensus disorder prediction 1 27 - -
Cmo15g00816 253 Pfam TCP family transcription factor 33 119 IPR017887 -
Cmo15g00816 253 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cmo15g00816 253 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 250 IPR005333 GO:0003700
Cmo15g00816 253 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01331 Cmo-Chr4:6776828 Cmo15g00816 Cmo-Chr15:4063640 1.08E-86 dispersed
Cmo15g00816 Cmo-Chr15:4063640 Cmo18g00812 Cmo-Chr18:9545980 3.67E-83 dispersed
Cmo15g00816 Cmo-Chr15:4063640 Cmo04g02347 Cmo-Chr4:17436112 9.49E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11175 PF03634 TCP 2.50E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00816 K16221 - csv:101214586 347.436