Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00832 ATGTCTTCTTCTCTTTCATGGTTCTTGTTTCTTTCCCTTTCGTTTACTTTTTCTGGTACTAGCGGCTCGGTTTCCTATGATGCAATGTCGCTCCTCAGGTTTAAGGGCTCTATTTCGCTAGACGGCTCTGATGTTCTTCGTGGTTGGAATTTGTCGGTTTCTCACTGCGATTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAATATCAGTGGAAGTGGTGGTGTTATGGCGGCGGATTCTGTTCTGGCTGGGACGTTGAATCCGGCGATTGGAAATCTTACTGAGCTTCGTGTTCTTTCGCTTGTGAATAATCTGATGTATGGGGAGATTCCGAGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAAACAGATTAGGTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGAGTAAATTGATAGGTTCGACGAAATTAGAAGCAATTGATTTATCGTACAATCAGTTATCTGGTAGTATTCAAGTTGTTGGTAATAGGTGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACCGATAACATTCCGGCGGAGATTGGACAATGTCGGAAACTCAGGACTCTGTTGCTCGATGGCAATATATTAGAGGGACAAATTCCGGCTGAGATCGGCCAAATATCAGAACTCAGAATTCTTGATATATCTAGGAATAGCCTCACCGATTCGATTCCAAAAGAGCTCGGTAATTGCCGGAAGTTATCACAGATCGTGTTGACGAATTTGAACGACACCAATCCCGACTACGATAGTTTAAGCGGCGAATTCAACGCTTTCAATGGAGGAATTCCTTCCGAGTTGTTATTGCTTCCCAGTCTACAAGTTTTTTGGGCGCCGAGAGGTAATTTTAATGGAAAATTGCCGAATAATTGGAGTTCTTCATGCTCGCTTAGGGTTCTAAATTTAGGGCAAAATTACATCACTGGAACCATACCCGAATCGATTGGGAACTGTGCGAATCTTACCTACCTGGATTTATCCTCAAACAAGCTACAAGGTAACCTCCCTGTGCAGCTTCGAGTTTCCTGTATGGCGTATTTTAATGTAAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGATAGTTTCTGTATGAACATGGTTCCGCATGAACCAGCTTCCAGATTCTTAGATGATGAAGATAATTGGAACTCTTACATCAATTCTCCTGTCTGGGATTTCCCAAGATTAAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGATCATTGACTTCGTTCAAAGTGGGAGAAGTGCTTTTGGCTAATGGTCACAAGTTCTCATACAAACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATCAATCTTGTCTCGAACTGTAACGATATGACGAGCGTTTCGGTTAACTTGAGTTCAAACTCAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATCGAGTTTGAAGCTGCAAGCAATGAATTAGATAACTCGATTGGACCTGGAATTGGTGACTTGCAGAGGGTTGTTCATCTCGACTTGAGAGAGAATAGATTATCTGGAGTTTTACCTGATCAGTTGGGGAACTTGCAGAGTTTGAAATGGATGCTTTTGGGTGGAAATAATTTGTCTGGAGAGATTCCATCTCGACTTGGTCGATCGACTTCTCTAGTGAGTTTAGATCTTTCTCGAAACGAATTTACAGGAGTTATCCCTGAAAGCTTATCATATGCTTCTAGACTTGAGATTTTGTTGCTTGATCATAACTGGTTATCTGGGGAAATACCAGCATCTTTCTCTGCTCTTTCTCATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTTTGATGGGAACAAGTTTCTGCATCCATGCCCGGAGTTGTACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCAACGTCGAGAAGTGGAAGAGACAAAGAAAGTTCATGTCCATGGTAATCGCTGTGGCTGCTTCCTCAACTCTAATTTGCTTACTCTTAATGATAGCTGTTATTATCATTGTTAAGAAAAGGCTTGATAGACAAAATAGGTTAAAGAAAAGACAAGTGGTGACTTTCTCTGATGCTCCGTCCGATCTGAATTATGATAATGTTGTCCGAGCGACTGAGAATTTCAGCCTTCGCTACCTAATCGGTACTGGTGGCTTTGGGTCGACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTTAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGACGCGGAGATTCGAACACTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTCGGATACTACGTCGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGAGACCTTCATTCATGAAAAATCGTGCAAACACGTAAAGCACTCGGTAATCCATAAGATTGCTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTTGATGAAGACCACAACACCTTCATATCAGATTTTGGGTTAGCCAGGCTTCTTGAGGTATCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATACGCAACCACTTGCAGGGTCTCGGATAAGGCCGATGTTTATAGCTTTGGAGTTGTGCTGCTAGAGTTGCTTTCTGGAAAAAGGTCGCTCGACCGATCCTTTTCTGACTTTGGGAACGGATTTAACATTGTTACATGGGCGAAAATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCTGAGGAACATTTGCTTGGAATGTTAACGCTCGCGTCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTTGTCGAGACACTGAAACAGTTGTAA 3132 42.94 MSSSLSWFLFLSLSFTFSGTSGSVSYDAMSLLRFKGSISLDGSDVLRGWNLSVSHCDWFGVTCDGVTGRVVALNISGSGGVMAADSVLAGTLNPAIGNLTELRVLSLVNNLMYGEIPRSVGKLQSLEVLELQGNNFSGEIPKQIRSLRSLRLLNLSDNSFSGSIPSKLIGSTKLEAIDLSYNQLSGSIQVVGNRCGVLNHLRLSHNFLTDNIPAEIGQCRKLRTLLLDGNILEGQIPAEIGQISELRILDISRNSLTDSIPKELGNCRKLSQIVLTNLNDTNPDYDSLSGEFNAFNGGIPSELLLLPSLQVFWAPRGNFNGKLPNNWSSSCSLRVLNLGQNYITGTIPESIGNCANLTYLDLSSNKLQGNLPVQLRVSCMAYFNVSQNKISGVLPRFEKDSFCMNMVPHEPASRFLDDEDNWNSYINSPVWDFPRLNDNLIIAHDFSWNRFSGSLTSFKVGEVLLANGHKFSYKLLLNSNQFNGSLPINLVSNCNDMTSVSVNLSSNSVSGEISDAFFLHCRQMIEFEAASNELDNSIGPGIGDLQRVVHLDLRENRLSGVLPDQLGNLQSLKWMLLGGNNLSGEIPSRLGRSTSLVSLDLSRNEFTGVIPESLSYASRLEILLLDHNWLSGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHMIDCIYFDGNKFLHPCPELYSDSPAGLPVPLNVEKWKRQRKFMSMVIAVAASSTLICLLLMIAVIIIVKKRLDRQNRLKKRQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTFISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPEEHLLGMLTLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4220710 4223841 + CmoCh15G008320.1 Cmo15g00832 398340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00832 1043 Gene3D Ribonuclease Inhibitor 286 411 IPR032675 -
Cmo15g00832 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Cmo15g00832 1043 Gene3D Phosphorylase Kinase; domain 1 729 844 - -
Cmo15g00832 1043 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 1043 - -
Cmo15g00832 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00832 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Cmo15g00832 1043 SUPERFAMILY RNI-like 90 392 - -
Cmo15g00832 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515
Cmo15g00832 1043 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Cmo15g00832 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515
Cmo15g00832 1043 SMART LRR_typ_2 123 146 IPR003591 -
Cmo15g00832 1043 SMART LRR_typ_2 641 663 IPR003591 -
Cmo15g00832 1043 SMART LRR_typ_2 569 593 IPR003591 -
Cmo15g00832 1043 SMART LRR_typ_2 545 568 IPR003591 -
Cmo15g00832 1043 SMART LRR_typ_2 243 267 IPR003591 -
Cmo15g00832 1043 SMART LRR_typ_2 147 171 IPR003591 -
Cmo15g00832 1043 CDD STKc_IRAK 774 1043 - -
Cmo15g00832 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Cmo15g00832 1043 Gene3D Ribonuclease Inhibitor 439 687 IPR032675 -
Cmo15g00832 1043 Gene3D Ribonuclease Inhibitor 193 285 IPR032675 -
Cmo15g00832 1043 Gene3D Ribonuclease Inhibitor 26 192 IPR032675 -
Cmo15g00832 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 5 1043 - -
Cmo15g00832 1043 SUPERFAMILY L domain-like 474 681 - -
Cmo15g00832 1043 Pfam Protein kinase domain 773 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00832 1043 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cmo15g00832 1043 SUPERFAMILY Protein kinase-like (PK-like) 744 1040 IPR011009 -
Cmo15g00832 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515
Cmo15g00832 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01164 Cmo-Chr14:9404275 Cmo15g00832 Cmo-Chr15:4220710 0 dispersed
Cmo15g00832 Cmo-Chr15:4220710 Cmo17g00121 Cmo-Chr17:692314 1.18E-139 dispersed
Cmo15g00832 Cmo-Chr15:4220710 Cmo01g00478 Cmo-Chr1:2280890 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74922 PF00069 Pkinase 6.10E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00832 - - cpep:111809121 2006.11