Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00846 ATGTCAACCCAGCACCAGAATGCGGATTCTAATGCCGTTTCAGGCGCTTCTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCCAGGCTGGGACTGCAGTCGAACGCTGTCTGATGCAGAAACACAAAGCTGGAACTGGAAGAATGATCAACAGCTCTCTGGACCCCAGAAAAGATTGGAAGATCTCTTGTGTCAGCCTGGTAACAACTTGTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTAGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACAGACGAACAAGTCGATACTTTGATGAGCATCGGTGGAAACACAGATGTAAACATGAAGTATGAAGCTTGCATCACCGATGGGCACATAAAACCGAAACCAGATTCCTGTATAGAGGAGCGCCACGACTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAGCAGTCAAAATTCTAGTGATAACAACTTATTGAATAAAAGCAGTTCATCATGCTCCCTAAGTAACACCCCAAGCAACAATGGTACCAACGACAAAAGGCCATATGAGAAACAACCTACTAGGTATCGCATTGGGCATGTATTTCGTACCAGCCGGATAATTAGAAGAGATAGTGAGCAGAAAACTTTAGACAAGAGAGGCCCTTCAGTCTCCAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTCAAGGTTAATGTGGTTAGAGGCACAAACCTAGCTGTCCGAGACGTGGTGACCAGCGACCCCTATGTAATTCTCATGTTGGGTCAACAATCAGTGAAGACTCGTGTTATTAAGAGCAACCTTAACCCAGTTTGGAACGAGAGATTAATGTTGTCAATTCCCGAGAATATCCCTCCATTAAAAGTGCTCGTCTATGATAAGGACACATTTTCAACTGATGACTTCATGGGTGAGGCTGAAATCGACATTCAACCATTGGTCGCTGCGACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGCTGGGAAAATGGATGGCGAGTACCGACAATACCTTGGTAAAAGATGGGGTCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATTTCTCTAAGATTGCAGAATGTGGAGAAAGGTGTCCTTGAGATTGAGCTAGAATGCATTCCTCTCACACAATAG 1242 43.48 MSTQHQNADSNAVSGASLFDLLFPDSEMPGWDCSRTLSDAETQSWNWKNDQQLSGPQKRLEDLLCQPGNNLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVDTLMSIGGNTDVNMKYEACITDGHIKPKPDSCIEERHDFIRRKYELLQFYNASSQNSSDNNLLNKSSSSCSLSNTPSNNGTNDKRPYEKQPTRYRIGHVFRTSRIIRRDSEQKTLDKRGPSVSRQTSAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILMLGQQSVKTRVIKSNLNPVWNERLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWMASTDNTLVKDGVINLVDGKVRQDISLRLQNVEKGVLEIELECIPLTQ 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4284174 4291662 - CmoCh15G008460.1 Cmo15g00846 398354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00846 413 ProSiteProfiles C2 domain profile. 240 355 IPR000008 -
Cmo15g00846 413 CDD ArfGap 60 166 - -
Cmo15g00846 413 MobiDBLite consensus disorder prediction 176 207 - -
Cmo15g00846 413 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Cmo15g00846 413 Gene3D C2 domain 256 411 IPR035892 -
Cmo15g00846 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 413 - -
Cmo15g00846 413 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Cmo15g00846 413 SMART C2_3c 258 353 IPR000008 -
Cmo15g00846 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 348 IPR035892 -
Cmo15g00846 413 MobiDBLite consensus disorder prediction 176 215 - -
Cmo15g00846 413 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096
Cmo15g00846 413 CDD C2_ArfGAP 256 400 - -
Cmo15g00846 413 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Cmo15g00846 413 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Cmo15g00846 413 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Cmo15g00846 413 Gene3D Arf GTPase activating protein 38 180 IPR038508 -
Cmo15g00846 413 SMART arf_gap_3 57 179 IPR001164 GO:0005096
Cmo15g00846 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 413 IPR044518 GO:0005096|GO:0005543
Cmo15g00846 413 Pfam C2 domain 258 350 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01445 Cmo-Chr3:10467242 Cmo15g00846 Cmo-Chr15:4284174 3.17E-115 dispersed
Cmo07g00063 Cmo-Chr7:358765 Cmo15g00846 Cmo-Chr15:4284174 2.69E-118 dispersed
Cmo13g00522 Cmo-Chr13:6123425 Cmo15g00846 Cmo-Chr15:4284174 3.16E-117 dispersed
Cmo13g01001 Cmo-Chr13:8525059 Cmo15g00846 Cmo-Chr15:4284174 1.14E-21 dispersed
Cmo15g00846 Cmo-Chr15:4284174 Cmo18g00872 Cmo-Chr18:10020555 6.49E-169 dispersed
Cmo15g00846 Cmo-Chr15:4284174 Cmo04g02315 Cmo-Chr4:17213598 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00846 K12486 - csv:101215531 644.81