Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00849 ATGGAAGAAAACGTTACTCTTTTTGAGGGTTTCCGTGCTTTTCAATCACTGTTTCGTCGCGATTTTAGGTGGAGGTATAAAACTGGCCTTGTAAGGATGGCATCTGGAGGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCCCAGAATGAAGATATGATGGACATCAGGGAAACTGTGGACGATCCAGCTCAAAATGAACTTAAACCGAACGTTGCTGTTTCGAGCAGCGTTCGCGATCTCTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACACTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCGACGTGCAGGCACGAACTTGGGAATATAAGATGTCTTGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATATCAGAGCTATGGCTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCGGAATGTTCAGTCGTCGGTGATATACCCTATTTGGTGGCTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGATACGTAAAATCGAACCCTCAAGAAGTTGAAAACGCTACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCCTGCATTTCGAAGCTTTCCAGCTAGGGATGGCGCCAGTATACATAGCCTTTTTGCGGTTCATGGGGGACGATAACGATGCAAAGAACTACAGCTATAGACTCGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTTTTCTTCTCTGGTGGCGATCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 1014 45.96 MEENVTLFEGFRAFQSLFRRDFRWRYKTGLVRMASGGPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPNVAVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYRLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4296437 4300520 - CmoCh15G008490.1 Cmo15g00849 398357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00849 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 198 330 IPR008974 GO:0005515
Cmo15g00849 337 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 337 - -
Cmo15g00849 337 SUPERFAMILY TRAF domain-like 142 334 - -
Cmo15g00849 337 CDD Sina 203 331 - -
Cmo15g00849 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 197 IPR013083 -
Cmo15g00849 337 Pfam Seven in absentia protein family 131 330 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo15g00849 337 ProSiteProfiles Zinc finger RING-type profile. 89 125 IPR001841 -
Cmo15g00849 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 141 IPR013083 -
Cmo15g00849 337 SUPERFAMILY RING/U-box 81 129 - -
Cmo15g00849 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 39 337 - -
Cmo15g00849 337 ProSiteProfiles Zinc finger SIAH-type profile. 142 202 IPR013010 GO:0008270
Cmo15g00849 337 CDD RING-HC_SIAHs 87 125 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01413 Cmo15g00849 CCT
Cmo04g02313 Cmo15g00849 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00849 Cmo-Chr15:4296437 Cmo16g00056 Cmo-Chr16:228802 1.43E-169 dispersed
Cmo04g01413 Cmo-Chr4:7192349 Cmo15g00849 Cmo-Chr15:4296437 0 transposed
Cmo04g02404 Cmo-Chr4:17906023 Cmo15g00849 Cmo-Chr15:4296437 9.78E-23 transposed
Cmo18g00871 Cmo-Chr18:10014647 Cmo15g00849 Cmo-Chr15:4296437 0 transposed
Cmo15g00849 Cmo-Chr15:4296437 Cmo04g02313 Cmo-Chr4:17203855 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00849 K04506 - csv:101220834 636.336