Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00857 ATGGGCAACAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTTTTCGTTTCAGAGACACAGACAAAGCCTGAGAAGAAGCAAAAGAGGTGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCGCCGTCGCCATCAAAAGCGACGATGAGACGAGAAGAGGAGGAGGAGGAGGAGAGGAAACAGGCTCTTTCTGTGGCCATTGCGACTACCGCAGCGGCCGAAGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCCCTCAATCTCATCAACAAAATGCTGCAGAAGAACCCTTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTTCTTAGGCGTGAAAGGGAAATCCATGAGTTTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAGGCATTGAGAGCACTGAAAGGAATAGTGAAGCTACAAGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTATTCAAATAGGCTTCACCCTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAGAGATAGGATCATAAAGTTGGATTCCAACGATCAAAGGTGGGATGACAGCCTACTATCAAAAGAAGAAGCCGATGCAGTGTTTTGTAGCAGAAAAGAAGCAGTGGTAAGGAGAGAGCGAGTCAAGGAATACTTGTTCGCCCACAGGAGGTCTACAGAGTCCGAGCGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTGGACACCCAGCTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATTTTCACCTCAAATCCAAACCCACCAACAAAAAACACAGAAGAACTCCCCAACCAATCTCCATATCAAAATCCAGCTCTGAAAAAACTGTCCCACCACAAGAAGCAGCGTTCACTGGGGGGCGGAATAGACTCAAACAGCTCATTTTCAAGCTCCCCACTGGTGCCAGCATACATGGCGGCCACTGAATCTGCAAAGGCAAAAGCAAGATCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACAGCTGCTCCGATGGGAACTCGCCGTGCAAGACAAAGCCGCTCTGTTTGGTGACTTCAACGGCGAGTGAGGTCGGAATTAGCAGGGGCAGAAGGGGGCTTCAGCAGCAGAGGTCGCCGGGGTTGAAGGGGCTTCCAGGGCCTACGAGATCAAGCAGAACTCTCAGTAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCGATGA 1377 49.53 MGNKKGWFYLVKKLFVSETQTKPEKKQKRWKWVFGRMRNKRLATLTAPSPSKATMRREEEEEEERKQALSVAIATTAAAEAAVAAAKAAVEVVWLTGTPQSHQQNAAEEPFKPLKKAPPSDLLRREREIHEFAAITIQTAFRGFLARKALRALKGIVKLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVYSNRLHPPQNTFNSPETKQFQSLRDRIIKLDSNDQRWDDSLLSKEEADAVFCSRKEAVVRRERVKEYLFAHRRSTESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPNPPTKNTEELPNQSPYQNPALKKLSHHKKQRSLGGGIDSNSSFSSSPLVPAYMAATESAKAKARSLSSPKLRPAGGLDSCSDGNSPCKTKPLCLVTSTASEVGISRGRRGLQQQRSPGLKGLPGPTRSSRTLSKDLSIDSEHSLPNWDRQSAFR 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4345006 4348699 - CmoCh15G008570.1 Cmo15g00857 398365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00857 458 MobiDBLite consensus disorder prediction 366 387 - -
Cmo15g00857 458 PANTHER IQ-DOMAIN 11 5 444 - -
Cmo15g00857 458 PANTHER IQ-DOMAIN 5-RELATED 5 444 - -
Cmo15g00857 458 MobiDBLite consensus disorder prediction 430 458 - -
Cmo15g00857 458 Coils Coil 52 72 - -
Cmo15g00857 458 MobiDBLite consensus disorder prediction 408 458 - -
Cmo15g00857 458 MobiDBLite consensus disorder prediction 296 345 - -
Cmo15g00857 458 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Cmo15g00857 458 Gene3D - 130 180 - -
Cmo15g00857 458 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Cmo15g00857 458 MobiDBLite consensus disorder prediction 297 324 - -
Cmo15g00857 458 Pfam IQ calmodulin-binding motif 133 151 IPR000048 GO:0005515
Cmo15g00857 458 Pfam Protein of unknown function (DUF4005) 344 411 IPR025064 -
Cmo15g00857 458 MobiDBLite consensus disorder prediction 43 65 - -
Cmo15g00857 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 172 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00857 - - - csv:101203390 719.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02013 Cmo-Chr1:14175837 Cmo15g00857 Cmo-Chr15:4345006 3.41E-07 dispersed
Cmo14g00555 Cmo-Chr14:2822954 Cmo15g00857 Cmo-Chr15:4345006 3.77E-38 dispersed
Cmo15g00857 Cmo-Chr15:4345006 Cmo04g02721 Cmo-Chr4:19731029 2.65E-37 dispersed
Cmo15g00857 Cmo-Chr15:4345006 Cmo04g02305 Cmo-Chr4:17145811 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00857 Cmo_Chr15 FPKM 5.914062 6.303537 9.75429 8.565124 6.170936 7.708874 8.039224 13.727983 14.155029 15.715297