Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g00865 | ATGGGTGTTGCTGTTGAATCGACTCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATAGGAAATTGATCGAGCGCCTCCTCAAAACCTCGTCCTATCATGTTACTGTTGTTGATTCCGGCAACAAGGCCTTGGAATTTCTTGGTCTTGTTGGAGATCATGATGATGATGATGATGATGATGATGAACCGGACTCCGAAATCGCTCCCTCAAATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCGGTTGTGATTATGTCCTCTGAGAATGTACCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGACGTGAGGAAATTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA | 483 | 42.03 | MGVAVESTQFHVLAVDDSFIDRKLIERLLKTSSYHVTVVDSGNKALEFLGLVGDHDDDDDDDDEPDSEIAPSNHHQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 4388575 | 4389747 | - | CmoCh15G008650.1 | Cmo15g00865 | 398373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g00865 | 160 | CDD | REC_typeA_ARR | 12 | 148 | - | - | |
| Cmo15g00865 | 160 | ProSiteProfiles | Response regulatory domain profile. | 11 | 153 | IPR001789 | GO:0000160 | |
| Cmo15g00865 | 160 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 3 | 158 | - | - | |
| Cmo15g00865 | 160 | MobiDBLite | consensus disorder prediction | 53 | 76 | - | - | |
| Cmo15g00865 | 160 | Pfam | Response regulator receiver domain | 74 | 147 | IPR001789 | GO:0000160 | |
| Cmo15g00865 | 160 | MobiDBLite | consensus disorder prediction | 53 | 67 | - | - | |
| Cmo15g00865 | 160 | SMART | REC_2 | 10 | 149 | IPR001789 | GO:0000160 | |
| Cmo15g00865 | 160 | SUPERFAMILY | CheY-like | 9 | 149 | IPR011006 | - | |
| Cmo15g00865 | 160 | Gene3D | - | 11 | 159 | - | - | |
| Cmo15g00865 | 160 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 158 | IPR045279 | GO:0009736 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g01403 | Cmo-Chr7:8052325 | Cmo15g00865 | Cmo-Chr15:4388575 | 3.16E-68 | dispersed | |
| Cmo14g00521 | Cmo-Chr14:2633524 | Cmo15g00865 | Cmo-Chr15:4388575 | 9.05E-74 | dispersed | |
| Cmo15g00865 | Cmo-Chr15:4388575 | Cmo04g02298 | Cmo-Chr4:17099257 | 4.36E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11179 | PF00072 | Response_reg | 3.70E-16 | CL0304 | Cmo | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g00865 | K14492 | - | csv:101210839 | 260.766 |