Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00878 ATGGGGATGATGGATGAGAATGCTTGCAATCAAGAATCTCAAGGACTTGAAATGCAAGAACTGGAGAGTACTATGAAAACTTTGACCAAACTGGAATTGAACTTGGCGTATTCCTCGGAGAAGTTGACGAATCTTCATGTGCTTTTAATGTGCCTAATGGCTCAGGAGAATGATTTTGAGGGAGTGGATCTGGAGAATGATTCTATCCCAGATGATTTGTTTGAGAAGGTGTTGGCATTTGATTTCTTGTCTGGCTTTTTGGACTCTGAGGTAAGAGAGCTGGACAGTAACATGGATTCACTCGAAGCGGAAATAGTTGATTCCCGTGGAATGACATCTTCTTGTAGACAATCAAGTGAAGTTTTCAATGTAGTAGAAGAGAAATTGAATGATTCTGAAAGATCGATCGTTCAATCCCGACAGCAGATTTTAGAAGTGAAGATGCAGTTAGCCAAATTGCAGAGAATGGTTTTAAGCAGTGGAAATTGGAGATTGGAGGATCCTGTGATGTCGTACCAAAATGATCAAGTTCTCAACATTAATGGGAAATCAAATCCAATAACTGAACAACAAAGACATATTCTAAGGATGCTAGAAAAATCACTTGCAAGGGAGCTAGATCTCGAGAAGAAGTTGTCAGAATCGAAGCAACGGGAAGAGGAGCTTAGATTGAAGCTACACTATACCGAACAGGTTACTTTGAGAATGGAAGAGGCTGCAGAAGTCGTTTGGGGTAGGTTTCTAGAGGCCGATAATAGTGTCGAGATTCTCATGGGGATTTCAAAGGAATTAGTTGGCCGCCTCCAGCTCGTCCAATTCAATCTACATGGTTCATTTCAACGCGAAAACGAGATCAAAGATAAATTTCAAGATTGGACGGAGCAGCTTAAAGCAAAAGAAGTGTCGATACAGAAGCTCGAGAAAAGGAACGCTGATCTAATTGCCAAGAATGCTGAACTAGATAAATTGAGGGAAGAAGTGAAGTCTCTTGAGGATCAGGTTAAAGAATCTAAGCTTGATCTGAAAAGTGCATATGACTCGAATGAAGCAAGTCAAGATCAGCTTATTGAAATGGAAAATCTTATTGAGTCACTGAAAGAGAGCATCTGCATATCAGAAAATAGAGCAGAGAATGTTGAAGCCAAGCTCACACAGCTGCAAGAGACGAACTTAGAACTTACTGAAGAAGTAAGTTTTCTTAAAGATAGTGCAAGCAACAAAGAGAAAAAGGTTGGTTCACTTGAAAAACAGTTGAGGGAACTAGAGATTCAATTGCAGCATGCAAAATCATCATCAGAAGCAAGTCAGGAGCAACAAAACATGTTATATTCTGCAATATGGGACATGGAAACTCTAATTGAAGAACTTAAATCCAAAGTTTCCAAAGCTGAAAGTAAGACTGATAGTGCAGAGGAGCATTACATTATCCTGTCTGAAACCAATTTTGAACTCAATAAAGAACTTGCTTCCCTCAAGGCTCGAATCGAGTTCTTGGAGAAAGCGTTGGATCAAGCCAGGAGTGCAAAATTTACGAACGCAAACGAAATTAACTTGAGTACCAAGTTTATCATGGACATGGTGCTCCAACTAGCTGTCGAAAGGGATCGCATTCAGAGTCAGCTATCCCTCTTGACAAATGATAACAAAGCTTTAATAGAGAGATTGAAAAATGTAAAAAATGGCGCATCTGTAGTAACACGTGACAGAGGAGACTACGACGAGGAGCAACGAAAGGTCAAGAGGCAGATTACTAAAGGACCTGAAGCCACACCCAAGTGCTGGGCTGAAGCCAGAGTGTTCCCCATTCTCTGGTTCTTTGTGGTTAAGATTTTCATGGCCTTTGGATCCAAAAGAAGAAAAAAGGTTGGGAGAGAGCCTAAGGTAACTGCACATTGCCCCCTCATGTATTCCATTATTGTTGTCAAATACATTTGTTTTAGGTTGTGGTGGTTTCTTTGA 1959 40.43 MGMMDENACNQESQGLEMQELESTMKTLTKLELNLAYSSEKLTNLHVLLMCLMAQENDFEGVDLENDSIPDDLFEKVLAFDFLSGFLDSEVRELDSNMDSLEAEIVDSRGMTSSCRQSSEVFNVVEEKLNDSERSIVQSRQQILEVKMQLAKLQRMVLSSGNWRLEDPVMSYQNDQVLNINGKSNPITEQQRHILRMLEKSLARELDLEKKLSESKQREEELRLKLHYTEQVTLRMEEAAEVVWGRFLEADNSVEILMGISKELVGRLQLVQFNLHGSFQRENEIKDKFQDWTEQLKAKEVSIQKLEKRNADLIAKNAELDKLREEVKSLEDQVKESKLDLKSAYDSNEASQDQLIEMENLIESLKESICISENRAENVEAKLTQLQETNLELTEEVSFLKDSASNKEKKVGSLEKQLRELEIQLQHAKSSSEASQEQQNMLYSAIWDMETLIEELKSKVSKAESKTDSAEEHYIILSETNFELNKELASLKARIEFLEKALDQARSAKFTNANEINLSTKFIMDMVLQLAVERDRIQSQLSLLTNDNKALIERLKNVKNGASVVTRDRGDYDEEQRKVKRQITKGPEATPKCWAEARVFPILWFFVVKIFMAFGSKRRKKVGREPKVTAHCPLMYSIIVVKYICFRLWWFL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4439953 4443380 - CmoCh15G008780.1 Cmo15g00878 398386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00878 652 Gene3D - 372 519 - -
Cmo15g00878 652 Coils Coil 91 111 - -
Cmo15g00878 652 Coils Coil 481 508 - -
Cmo15g00878 652 Coils Coil 446 473 - -
Cmo15g00878 652 Coils Coil 534 554 - -
Cmo15g00878 652 Coils Coil 136 156 - -
Cmo15g00878 652 Coils Coil 289 368 - -
Cmo15g00878 652 Coils Coil 376 438 - -
Cmo15g00878 652 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 9 584 - -
Cmo15g00878 652 Coils Coil 205 225 - -
Cmo15g00878 652 SUPERFAMILY Tropomyosin 320 505 - -
Cmo15g00878 652 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 9 584 IPR039976 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00878 - - - cmo:103503596 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00467 Cmo-Chr1:2231520 Cmo15g00878 Cmo-Chr15:4439953 9.49E-105 transposed
Cmo15g00878 Cmo-Chr15:4439953 Cmo04g02287 Cmo-Chr4:17021419 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1011 . Blo16g01071 . Bda11g01160 Bpe13g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0511 . . . . . . . Bda11g01160 . . . Bma06g00749 . . Cmo15g00878 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006325 1 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00878 Cmo_Chr15 FPKM 0.65019 0.0 1.330225 1.119849 3.14894 2.739226 4.371636 0.0 0.0 0.0