Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00881 ATGAACGGGAAGGATGAATTTGAAGATGAGAGTAGGAGGAGTGATCCTATGAGTATCACCTCCGGCTGGCAATTTGCTGGTGCTGTTAGCAATGAGGATCTAAGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTTACTCCAACCCTTTTGAACTCGGGATTCTGCAGCAGTTTTAATGAACAAAACAGCATAGTTACTCGAGAAGGTCTGGATTCTTTGAGATCTAATGGTGTGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGGAAATGTTCATGGATTTCCTGCTAATTTATCTCAACTTCCAGCTGATTCAGCGTTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAACAGCGGAGTTTTCAGGGCTTCGCCGCCTGTGGGTCCTTTCGATATTGCAAACTCCATCGGCATTCATTCTAGACAAGAAGTTATGTCCAGAAATGTAGCCTCCAAGGATGGTTCTTTGCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCACCTAAGAATGAGAAAGAAAGTGAAATGTCTCAAGCCAGAGGTAAAGAATCCGATGAGGCCGGGTTCAGTGGCGGTCATGGTGAGCGATGCGTGTTGGAAGGTACTATCACAGAACCATCTATGGATGAACTATGCTTAAGGAAAAGGAAAAGGGATGAACAGAATATAGAACTTGGACAAGTTAAAGAAGCTCCCCAACAAGTTAACGAAACTGCCAAGAATGGCGCATCGAATCAGCAGAAGGGAACACAAAACCCGAGTTCTACTACGAATAAGCCTGCTGAAAAGCAAGGGAAACAAGATTCTCAGCCGACGGATGCTCCCAAAGAAGAGTATATTCATGTTCGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGACTCCTTCAGGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCGTTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATTTCAACATCGAAGAGCTCCTCACAAATGAAATCATTCAATCAAAGGCTGGTCCATCCTTACTTAATTTTCCTCCTGATATGCCTATGCCTTACCTCCCGCAACATCCGTCTCATCTAGGACTTATTCCACCTTGTCTTCCAAACATGGCGAGCTCTCCGGACCTGCTACGAAGAACGTTAAATTCCCAGCTAACTTCACTCGTTGGTGGATTCAAGGAGCCAGTTCAGATACCGAATGGGTGGGAGAACGAACTCCACAATGCTGTTCCAATGAGCTTTGATGTCGCTGCGCCTACCAGTGGCCAAGATGTAGACGGTACTATTTGTTCAAGTTTACCCATGTGA 1440 44.72 MNGKDEFEDESRRSDPMSITSGWQFAGAVSNEDLSVSSCPSTSMSNLFTPTLLNSGFCSSFNEQNSIVTREGLDSLRSNGVDWNQQNPWMKGVFSGNVHGFPANLSQLPADSAFIERAARFSCFNSGVFRASPPVGPFDIANSIGIHSRQEVMSRNVASKDGSLPMELEAKEKSPPKNEKESEMSQARGKESDEAGFSGGHGERCVLEGTITEPSMDELCLRKRKRDEQNIELGQVKEAPQQVNETAKNGASNQQKGTQNPSSTTNKPAEKQGKQDSQPTDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTNEIIQSKAGPSLLNFPPDMPMPYLPQHPSHLGLIPPCLPNMASSPDLLRRTLNSQLTSLVGGFKEPVQIPNGWENELHNAVPMSFDVAAPTSGQDVDGTICSSLPM 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4461494 4465031 + CmoCh15G008810.1 Cmo15g00881 398389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00881 479 MobiDBLite consensus disorder prediction 232 282 - -
Cmo15g00881 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 153 IPR024097 GO:0006355
Cmo15g00881 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 143 475 IPR024097 GO:0006355
Cmo15g00881 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 365 IPR036638 GO:0046983
Cmo15g00881 479 Pfam Helix-loop-helix DNA-binding domain 299 347 IPR011598 GO:0046983
Cmo15g00881 479 SMART finulus 302 352 IPR011598 GO:0046983
Cmo15g00881 479 Gene3D - 293 367 IPR036638 GO:0046983
Cmo15g00881 479 PANTHER TRANSCRIPTION FACTOR BHLH49 38 153 - -
Cmo15g00881 479 PANTHER TRANSCRIPTION FACTOR BHLH49 143 475 - -
Cmo15g00881 479 MobiDBLite consensus disorder prediction 165 198 - -
Cmo15g00881 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cmo15g00881 479 MobiDBLite consensus disorder prediction 235 276 - -
Cmo15g00881 479 CDD bHLH_AtBPE_like 286 371 - -
Cmo15g00881 479 MobiDBLite consensus disorder prediction 157 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01641 Cmo15g00881 CCT
Cmo15g00881 Cmo18g01098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01641 Cmo-Chr4:8388080 Cmo15g00881 Cmo-Chr15:4461494 6.66E-110 dispersed
Cmo11g01117 Cmo-Chr11:6266486 Cmo15g00881 Cmo-Chr15:4461494 6.97E-53 dispersed
Cmo15g00881 Cmo-Chr15:4461494 Cmo18g01098 Cmo-Chr18:11457766 2.56E-74 dispersed
Cmo15g00881 Cmo-Chr15:4461494 Cmo04g02285 Cmo-Chr4:17008547 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11181 PF00010 HLH 5.70E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00881 - - csv:101216110 746.888