Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00882 ATGGTTCAGCTCTTTCTAGAAGCTTCTACGCCCACCCCCTTAAACCCTGGCTCAAGGGTTCAATTACACCAGTTTCTCCCACTGGAACTGCTCCTTCTCTGCAACACTCTTATCTTTTCACAGCGCTTCATGGCTCCAATCTTCACTAGAACTTTATCCACTTTTGCTCTCTCTTCACTCCCTTCATCTTATTCTCACCCTCTGCCAAGCAGTGCTACGCGCTCGAGCTTCACAAGTGCTTTTCTGCACCAAAATGGGCTCAGAAATGGCTTTTCTTGTGATGGGTTGAAGTGGAAGATTGAGAAGAAGAGAAACCGGATTTCGGTCAGGTGCGAAGCGGCCGTCGCTGAGAAAGAAGCTACTGAGACTCTTGGTGAGAAGTTTGAGTACCAAGCCGAGGTTAGTCGCCTCCTGGATTTGATTGTTCACAGCCTTTATAGCCACAAGGAAGTGTTTCTTCGAGAGCTAGTGAGTAATGCGAGTGATGCTTTAGACAAGCTAAGATTCTTGAGCGTGACCGAGCCTACTCTGCTTGGAGATGCTGGTGACCTTGAAATACGTATCAAACCTGATGCAGACAGTGGTACTATCACCATAACAGATACTGGCATTGGAATGACTAAAGAAGAGCTCATTGACTGTCTTGGAACTATTGCTCAGAGTGGCACTTCAAGATTCTTGAAAGCTCTTAAGGAAAATAAGGACGCCGGAGCAGATAACAGCTTGATCGGCCAATTTGGTGTTGGGTTCTATTCAGCCTTTCTGGTTGCTGAAAAGGTTGTTGTATCCACTAAGAGCCCAAAATCAGATAAACAATATGTTTGGGAAGCAGTAGCGGATAGTAGTTCATATGTTATTAGGGAAGAAACTGATCCTGAAAAGCTCCTACAGCGGGGAACACAGATTACCCTCTACTTAAGGGAAGACGACAAGTATGAATTCTCTGATCCGTCTAGAATTCAAGGTTTGGTCAAGAATTACTCACAGTTCGTTTCCTTCCCCATCTACACATGGCAAGAGAAATCAAGAACCGTTGAGGTGGAAGAAGAAGAAGAACCGAAAGAAGGAGAAGAACCAAAACCAGATGGTGAGAAGAAAAAGAAGACAACAACTGAGAAGTATTGGGACTGGGAATTGGCTAATGAAACAAAGCCAATATGGATGCGGAATTCAAAAGAAGTTGACAAGGACGAGTACAATGAATTCTATAAGAAGACATTTAATGAGTTTCTAGACCCACTTGCATATACTCACTTCACCACTGAGGGCGAAGTGGAGTTCAGGAGTGTTCTATATATTCCTGGAATGGGACCTTTGAATAATGAGGATGTTGTAAGCTCTAAAACAAAGAATATCCGTTTGTATGTCAAGCGTGTCTTCATCTCTGATGATTTTGACGGTGAGCTGTTTCCACGATATTTGAGCTTTGTGAAAGGTGTGGTAGATTCTGATGATCTCCCCTTGAACGTTTCTCGAGAAATTCTTCAAGAAAGCCGAATTGTGAGAATTATGAGGAAGAGACTTGTTAGAAAAACATTTGACATGATTCAAGACATCTCTGAAAGTGAAAATAAAGAGGATTACAAAAAATTCTGGGAGAATTTTGGCAGGTTCTTAAAATTGGGTTGTATTGAGGATACTGGAAATCACAAGCGCATAACACCATTATTGCGTTTTTACACCTCCAAAAGCGAGGAGGTCCTGAAGAGCTTGGATGATTATGTAGAGAACATGGGGGATAATCAGAAGGCAATTTACTACTTGGCGACTGACAGCTTAAAGAGTGCCAAGAGTGCTCCATTCTTGGAGAAGTTGGTTCAAAAAGACATTGAGGTTCTTTACTTGATTGAACCTGTGGATGAAGTTGCTATCCAGAACATACAGACATACAAGGAGAAGAAATTTGTTGATATTAGCAAGGAAGATTTAGAGCTGGGCGATGAGGATGAAGTTGAAGAACGAGAAACTAAGCAAGATTACAACCTTCTCTGTGACTGGATTAAGCAACAACTAGGTGACAAGGTTGCAAAAGTCCAAGTCTCAAAGCGCTTAAGCTCTTCTCCATGTGTCCTAGTTTCTGGCAAGTTTGGATGGTCTGCAAATATGGAAAGGTTGATGAAGGCACAGGCTCTAGGGGATTCTTCAAGTTTGGAGTTCATGAGGGGAAGGAGAATTTTGGAGATTAATCCTGACCATCCGATTGTCAAGGATCTAAATGCGGCTTGCAAAAATTCACCGGATAGCAGTGATGCTAGGAGAGCCGTTGATCTTTTATACGAGACAGCATTGATATCCAGTGGATTCTCTCCTGATAGCCCAGCCGAGTTGGGAAGCAAGATATATGAGATGATAGCAATGGCTGTTGGAGGAAGATGGGGTCGATTAGAAGACAATGCCATTGCCGAAGATGCTGCCGAGGCCGACAGCACTGAAGCACCAGAAGTGCAAGTGATCGAACCCTCGGAAGTGAGGACAGAGGATGATCCATGGCAGAATTAG 2499 43.26 MVQLFLEASTPTPLNPGSRVQLHQFLPLELLLLCNTLIFSQRFMAPIFTRTLSTFALSSLPSSYSHPLPSSATRSSFTSAFLHQNGLRNGFSCDGLKWKIEKKRNRISVRCEAAVAEKEATETLGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPTLLGDAGDLEIRIKPDADSGTITITDTGIGMTKEELIDCLGTIAQSGTSRFLKALKENKDAGADNSLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWEAVADSSSYVIREETDPEKLLQRGTQITLYLREDDKYEFSDPSRIQGLVKNYSQFVSFPIYTWQEKSRTVEVEEEEEPKEGEEPKPDGEKKKKTTTEKYWDWELANETKPIWMRNSKEVDKDEYNEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEDVVSSKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISESENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFYTSKSEEVLKSLDDYVENMGDNQKAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPVDEVAIQNIQTYKEKKFVDISKEDLELGDEDEVEERETKQDYNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDSSSLEFMRGRRILEINPDHPIVKDLNAACKNSPDSSDARRAVDLLYETALISSGFSPDSPAELGSKIYEMIAMAVGGRWGRLEDNAIAEDAAEADSTEAPEVQVIEPSEVRTEDDPWQN 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4464899 4470946 - CmoCh15G008820.1 Cmo15g00882 398390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00882 832 SMART HKATPase_4 148 310 IPR003594 -
Cmo15g00882 832 MobiDBLite consensus disorder prediction 344 369 - -
Cmo15g00882 832 Gene3D - 554 641 - -
Cmo15g00882 832 PANTHER HEAT SHOCK PROTEIN 90-5, CHLOROPLASTIC 65 825 - -
Cmo15g00882 832 MobiDBLite consensus disorder prediction 804 832 - -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 243 265 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 126 146 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 196 213 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 298 315 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 214 231 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 147 169 IPR020575 -
Cmo15g00882 832 PRINTS 90kDa heat shock protein signature 317 335 IPR020575 -
Cmo15g00882 832 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 149 308 IPR003594 -
Cmo15g00882 832 Gene3D - 642 787 IPR037196 -
Cmo15g00882 832 SUPERFAMILY Ribosomal protein S5 domain 2-like 383 641 IPR020568 -
Cmo15g00882 832 Gene3D - 112 356 IPR036890 -
Cmo15g00882 832 Pfam Hsp90 protein 313 810 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo15g00882 832 Gene3D - 381 553 - -
Cmo15g00882 832 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 126 341 IPR036890 -
Cmo15g00882 832 CDD HATPase_Hsp90-like 135 331 - -
Cmo15g00882 832 Hamap Chaperone protein HtpG [htpG]. 116 785 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo15g00882 832 PIRSF HSP90_HTPG 99 827 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo15g00882 832 SUPERFAMILY HSP90 C-terminal domain 663 784 IPR037196 -
Cmo15g00882 832 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 65 825 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo15g00882 832 ProSitePatterns Heat shock hsp90 proteins family signature. 146 155 IPR019805 GO:0005524|GO:0006457|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00882 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101215867 1317.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00228 Cmo-Chr2:1063366 Cmo15g00882 Cmo-Chr15:4464899 0 dispersed
Cmo15g00882 Cmo-Chr15:4464899 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo15g00882 Cmo-Chr15:4464899 Cmo04g02283 Cmo-Chr4:17001131 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1005 Blo01g00465 . Bda01g01785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0515 . . . . . . . . . Bpe02g01962 Bma01g00137 . . . Cmo15g00882 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001704 2 2 2 3 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 3 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00882 Cmo_Chr15 FPKM 13.141774 12.711247 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0