Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00893 ATGAATGGAGATGTAGCGACGGTGGTAACGGCGGCCGCACCGATGGGTTCAGCAGAGCCCCAGTACGTAAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGCTGCGATCCTCACGCAATCGCCCAAAACATCAGCTCCGCCCTCGTGAAAATCAACTACTGCGGTCCTGTTTCCATTTCCGCCTACGGAGATACTAATCGCATTCCCAACTCTATTCAGCAAGCTCTCTCCAGTACTGGCATCGCCTTGAATCACGTCCCTGCCGGTGTTAAAGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCGGTCGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCCGGTGATAGAGATTTTTCTAACGCGCTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAGGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACTTCCAATATCCAGTGCGGAATCATCTCAACTCGTGAACGGTACCCTTACTTCTGACCCTCAAATATCTCAGAACTCTGGACTTGATCATAATCAGCAGACAGCACAAGCTATAGTATACAAACCTGAAAATGTCTCTTTGGGAAACAACAAACATAAAGGTAAATCTATACATAAAAACTCCAACCAACCAGTCCTATCCAGAGCCTTAAGCTCGCCTGTTTCTAGGCACGAGGAAAGCCCTAGTTTTTTAAACCAACCAAATCATATCCAAGCAAAGCAGTTTAAGAAAGCACCTCATGAATTCTTCGGTAATAGCGGTAATAGCAGTTCGGTAGCCTCTTCTAGTCAGTCTACTCCAAACCTGTTTATTGAAAATTACACTCATGCTAGGACTGATGGTAGTGTTTCAATGGGTAGTTCCTCGAGTTACCAGCCTCCTCACGTGAGGCAAAAAACAATGCAGCTCCATCCTCCTTTTCGGCCAGATTATGTTTTTTCTCCTAACCCCGTTAATCGTAATTCTATCCCAGTCCCTACTCAACCCGATCTCTCTGCACCCAATATCAGTAAGCTGCATATCTCTGATCACCCCAATTATGCTATAAATCCTCAAAATTTTCATCACCAAGCTAGTGAATTTAGACCACATACTACGTTTCAAAACTTTGCCAACTTTAACTCGCCAGACAAAGGCCGTAGTCAGCATGGTAGCCAGTCATTCCATCATGATGCGTTGAATAAACGACATGCTCGTGATGTAGAGTATGCACCTCATTCATCTTCCACCACTCTTGTTAGAAGTTCTTCTTATAATGATGCCTGGGGATCTCAGGGGCAACCACCACCTTCGGAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTTGCATTAAACACCCTGAAAATGGAAAAAATTAGTCCAAATGAGGCAAATATAACTGAGTGCATCCGATATGGAGACTTGAGAAACTGCAATACTGATGTAAAAATGGCACTAAATAGTGCAATAGAGCATAATATGGTAGTGAGGCATAATTTTGGAGCTGTGCAATTGTATGTTGGTAAAACAGAAAAATTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCCAATCAATACCAAAAAGCTATATGGGATAAGATTCAGAATTTTTTGGCTTCTCCAGCTGGTCGTTCTGCAATAATGGCTTCTTCTTGCAGATATCAAGCAGCATTGATTCTAAGGAACGAATGCTTAACCGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGTATATGATAACCTCAATGAAGAAATGGATTACTCATCATATTTCAGGATGGCAGCCAGTTAATATTATGCTAACAGAAGGTAATACATATGGAAGTTCAAGAACTGAACTTTGA 1911 42.75 MNGDVATVVTAAAPMGSAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQRASAPLVAAAKSVWLWMSLVAGGLPISSAESSQLVNGTLTSDPQISQNSGLDHNQQTAQAIVYKPENVSLGNNKHKGKSIHKNSNQPVLSRALSSPVSRHEESPSFLNQPNHIQAKQFKKAPHEFFGNSGNSSSVASSSQSTPNLFIENYTHARTDGSVSMGSSSSYQPPHVRQKTMQLHPPFRPDYVFSPNPVNRNSIPVPTQPDLSAPNISKLHISDHPNYAINPQNFHHQASEFRPHTTFQNFANFNSPDKGRSQHGSQSFHHDALNKRHARDVEYAPHSSSTTLVRSSSYNDAWGSQGQPPPSEYIQGLIGVILLALNTLKMEKISPNEANITECIRYGDLRNCNTDVKMALNSAIEHNMVVRHNFGAVQLYVGKTEKLWKCVNPLGGHPNQYQKAIWDKIQNFLASPAGRSAIMASSCRYQAALILRNECLTDFALGDVLQILYMITSMKKWITHHISGWQPVNIMLTEGNTYGSSRTEL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4509498 4513197 - CmoCh15G008930.1 Cmo15g00893 398401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00893 636 Pfam OST-HTH Associated domain 573 626 IPR025677 -
Cmo15g00893 636 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 16 619 - -
Cmo15g00893 636 MobiDBLite consensus disorder prediction 395 409 - -
Cmo15g00893 636 MobiDBLite consensus disorder prediction 219 262 - -
Cmo15g00893 636 PANTHER LIMKAIN B LKAP 16 619 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cmo15g00893 636 CDD PIN_limkain_b1_N_like 26 150 - -
Cmo15g00893 636 MobiDBLite consensus disorder prediction 233 262 - -
Cmo15g00893 636 MobiDBLite consensus disorder prediction 395 421 - -
Cmo15g00893 636 Pfam NYN domain 26 162 IPR021139 GO:0004540
Cmo15g00893 636 Gene3D - 21 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00535 Cmo-Chr4:2656830 Cmo15g00893 Cmo-Chr15:4509498 6.00E-31 dispersed
Cmo15g00893 Cmo-Chr15:4509498 Cmo20g01089 Cmo-Chr20:10375329 8.49E-40 dispersed
Cmo15g00893 Cmo-Chr15:4509498 Cmo02g00593 Cmo-Chr2:3594612 5.16E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00893 - - cmo:103503825 1051.2