Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00895 ATGGCTGTTGACGTTCATTCCTCTTTTCCCAATGGAATTCGTGATCTTCCCACTAATCCTGACGAAATCGGTCAACTTCCATTAATGAATGCTTCTGATAATCCCAAGCTCGACACTAAGCTTTCAGTCTCGCCCACTGTAGATGAAAATCAGATGAAGCTCTCTGATAATGAATCTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTTGTCGTTCGATGTCGAGAAATCAGAGGATTCTACCCTTAACGGTCATATTCCTGTTCGTCCCCACCACGAATTGAATCTCAATAATGGAGAGATACGCGTATTGGAGCCTCATTCTCAGCTTCCTAAACCCGAGGCCCCACCTGGACTTTCCGTTTCCTCCGTTGGTGAACCGCCGTACAAACGATCGCAGAGTTTGGCCGAGAATAACTCCGTCGACATGTCGTCGATTGGGAAGTTTATACGGGAGAGAAGCAATAGTTTATCGGCCGCGATTCTCAAGCGGATTTCGTCGCTTAAGGATGAAGAGAAGGACGACGTGGACGAGAACGGGAAGTCTCAGACCGGCGTCACTGAAATCAACCTCTCCGGTTTCAAAGTGGTGGTGAAGCGGAAGAGCGATGAAGAGAGAGACAGAGAACTGAAAGGAAGAATCAGCTTCTTTTCGAGGTCGAATTGCAGGGATTGTAAAGCGGTTAGGAGTTTCTTCAACGAAATGGGATTGAGATTTGTTGAGATCAACGTCGACGTTTTTCCTCAGAGAGAGAAGGAGCTGATGAAGAGGACTGGGAGTTCATTGGTGCCGCAGATTTTCTTCAACGAGAAGCATTTTGGAGGTCTCGTGGCGCTGAACGCACTGAGAAACAGCGGCGAATTTGACCGGAGAATCAGAGATATGCTCAGCAATAAATGTCCCGACGACGCACCGGCTCCGCCGGTCTACGGTTTCGACGATCCAGAGGAGGGATCGCCGGACGATCTACTGGAGATCGTGAAATTTCTTAGACAGAGATTGCCGATTCAGGACCGTCTGATCAAGATGAAGATCGTCAAGAACTGCTTCTCCGGCAGCGAAATGGTGGAAGCGCTTATTCAGCGCCTTGATTGCGGCCGTAGAAAGGCTGTTGAGATTGGAAAGCAGATGACCCAGAAGCTCTTTATCCATCATGTCTTTGGGGAAAGTGAATTTGTAGATGGGAAACATTTCTACCGTTTCCTTGAGCATGGGCCATTTATATCCCGGTGCTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCACCGCCATGGTTGCACAAAAACTAGCCAAGATCATGTCCGCCATTTTAGAGTCCTATGCCTCTCAAGATCTCCAACATCTTGATTATCTCACCATTAGCAACACCGAAGAGTTTCGAAGGTACATGAACTTAATTCAAGATCTTCACCGCATGAACCTCTTGGAATTGTCACATGATGAAAAGTTGGCTTTTTTCTTAAACCTGTACAATGCTATGGTCATCCATGGCTTCATACGATTTGGACGAGTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCCGACTTCCAATACTTGGTCGGCGGACACCCATATTCACTCATCGCCATAAAAAATGGGATTCTTAGAGGAAATAGAAGGCCACCCTACTCCCTTATCAAGCCCTTCAGCGCTTCTGACAAGCGATTGGAGCTTGCGTTTGGGAAAGTGAATCCATTAATTCACTTTGGACTGTGGAATGGGACAAAGTCTAGCCCAAGACTCAGATTCTTTACTCCTCAAGGAGTGGAAGCAGAGCTAAGATGCGCCGCAAGGGAGTTCTTCCAAACTGGGGAAGTGGAGGTTGATTTGGACAATAGAACTGTGCATCTCCCTGGAATCATCAAGTGGTTCAGTGTGGACTTCGGAGCAGAGAAGGAGATTTTGAGGTGGATAATGAGGTTCTTGGATGCCAAAAAAGCAGGCCTTTTGACGCACCTTTTGGGGGATGGAGGTGCTGTCAACATAGCCTACCAGAACTATAACTGGACCATGAATTCTTGTTGA 2049 46.95 MAVDVHSSFPNGIRDLPTNPDEIGQLPLMNASDNPKLDTKLSVSPTVDENQMKLSDNESPSSSSSSSSSSSSLSFDVEKSEDSTLNGHIPVRPHHELNLNNGEIRVLEPHSQLPKPEAPPGLSVSSVGEPPYKRSQSLAENNSVDMSSIGKFIRERSNSLSAAILKRISSLKDEEKDDVDENGKSQTGVTEINLSGFKVVVKRKSDEERDRELKGRISFFSRSNCRDCKAVRSFFNEMGLRFVEINVDVFPQREKELMKRTGSSLVPQIFFNEKHFGGLVALNALRNSGEFDRRIRDMLSNKCPDDAPAPPVYGFDDPEEGSPDDLLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIQRLDCGRRKAVEIGKQMTQKLFIHHVFGESEFVDGKHFYRFLEHGPFISRCFNFRGSVNDNEPKPTAMVAQKLAKIMSAILESYASQDLQHLDYLTISNTEEFRRYMNLIQDLHRMNLLELSHDEKLAFFLNLYNAMVIHGFIRFGRVEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSLIKPFSASDKRLELAFGKVNPLIHFGLWNGTKSSPRLRFFTPQGVEAELRCAAREFFQTGEVEVDLDNRTVHLPGIIKWFSVDFGAEKEILRWIMRFLDAKKAGLLTHLLGDGGAVNIAYQNYNWTMNSC 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4523668 4528225 + CmoCh15G008950.1 Cmo15g00895 398403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00895 682 PANTHER F26K24.21 PROTEIN 64 681 - -
Cmo15g00895 682 MobiDBLite consensus disorder prediction 35 80 - -
Cmo15g00895 682 Pfam Protein of unknown function, DUF547 483 608 IPR006869 -
Cmo15g00895 682 Gene3D - 325 455 IPR036388 -
Cmo15g00895 682 MobiDBLite consensus disorder prediction 1 97 - -
Cmo15g00895 682 Gene3D Glutaredoxin 213 299 - -
Cmo15g00895 682 Pfam Glutaredoxin 219 275 IPR002109 -
Cmo15g00895 682 SUPERFAMILY Thioredoxin-like 215 297 IPR036249 -
Cmo15g00895 682 ProSiteProfiles Glutaredoxin domain profile. 205 302 - -
Cmo15g00895 682 ProSiteProfiles DEP domain profile. 333 406 IPR000591 GO:0035556
Cmo15g00895 682 SMART DEP_3 333 406 IPR000591 GO:0035556
Cmo15g00895 682 MobiDBLite consensus disorder prediction 111 140 - -
Cmo15g00895 682 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 337 404 IPR000591 GO:0035556
Cmo15g00895 682 CDD DEP 325 403 - -
Cmo15g00895 682 SUPERFAMILY Winged helix DNA-binding domain 325 428 IPR036390 -
Cmo15g00895 682 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 64 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00895 - - - csv:101218879 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03121 Cmo-Chr4:21660704 Cmo15g00895 Cmo-Chr15:4523668 6.11E-133 dispersed
Cmo15g00045 Cmo-Chr15:276600 Cmo15g00895 Cmo-Chr15:4523668 2.28E-122 dispersed
Cmo15g00895 Cmo-Chr15:4523668 Cmo14g00900 Cmo-Chr14:4777486 8.38E-22 dispersed
Cmo15g00895 Cmo-Chr15:4523668 Cmo04g02271 Cmo-Chr4:16940599 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00895 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00895 Cmo_Chr15 FPKM 0.033237 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0