Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00905 ATGGTGCCACTCATAACGGAGCTTCCTGTAATCAATGGCTTTCACCCATTGCTCCGTTCCTCCTTATGCCGATACCCTTGTTCCTCAATTCGCAGCCTCTTCTTTCGCCGCCGGAAGATGTTTCTCGGGTTGGCTGGATATCGGAATTCCTACCCGTTTCTGAGTACTACAGCGAACAGTTCTTTGTCAAATGCTGCTGGAAGGGCCAATATGGAGAAGGATTTCTGGGATGATTATGAGTTCGTGGAAGTGATTGGCATTGGCAGTAGGAAGGAAGCCGTACTTGATTTTTGTCTCGAGTCGGCTCTCAGGATTTCATCTCTGCGATTTTGGCAAATCGTAAAGCATGATTCTCTAAAAGTGCAACTACTTCAGAGATTCATTGGAAAAGATTATAACCCAAGGATGATTGACGTTCCACTGTCACTACAATCGTGTTCGAAGGCTGTTATACTTGTGGTTAGTGCTGGATATGGCTTGGATTACTCTGCAGCTGTTGATATTCTTAGAACCGTAAGATCTGCAAATGGATTTACTGTAACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGGCAAAGGCGCCAGGATGAGGTTAAACATCTGGTAGGAAGGCTAAAGGAACATACAAGCTTCTTAATCGATATTGACACCGATAGACTACTTGAAAAGGACTTGGTCACTCTTGATGAGGCTGTGAGATCTGCTAATAGTGCTGTCTTGATGGCTATAAATTCAATATCCATTATCAAGTCTGAAATGTTGACTAAGTTCATAGATGAGCCTCAGAATAGTGTGAAAGAGCTTGGTGTTATAGACGTCATGGAAGATTTGAAAGGTGCGGTTTTATGCATCGTGGCAAGCTCAAGTATTATTGATGACAATGATAAAAGTACCCTGTTGAAAACTTTTCGTGAAGTTACAGCATATACAGGAAAAGTTATATTATCCATAATTCAAGATCTAAATCTGGAGCCCAACTTTCTCATGACAACCATCCTTATTGTTGGCTCAACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCAAGATTGGCCCAGCGTTTCCCTTCGGTTTTCAAGCTTTTATGGAAACCTCAAGAACCATTAGAGGAAGCTGAAGAAAGTGATATGCCTGAAGATGCAAATCCTTCCAATGTAAGAGAGTCATCAGACTCTGATATGGTCATAACTCAAATTGCTTCAGAGGGCTTGGATAAAATTTTTTATCAAGATCCTGAAAATCTCCAGACAACATTCAACTACAGTGATTTATTAAGTTCAAGGGGAACAAATGACAGTGATTTTGAACAACCTGAGGCTGGAATAGTAGAAACTGATGTGAATTCTTTGCCTTTCAGCAATGCAGTTAGTAGAGGAGCTTCTTTTCGCAGAGACCCCCTCCACAGATGGAATTTGGGTCCAGCACATCAGATTGCACAGCAGTGGGCTAGGGAAAGAGCTGCTGATGCTGAATTGGCTTCTGCATTTGACAGTATAAGCATATTTGACCTCCCAGTTGGGGTGAGACCTTCAGAAGAGCTGAAAGATAAATCCACTCCAAATCCAGAGATGAAATATGAGAAGAAATCTAAAGCTTCAATTACTACTTCCAGATTTTCTTCTCAGACTTCGTTAACTGATACTAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCATCTGCATTTTTAAGAGGGAAATCTCCTGACCTTCCTAAGAAGCAAGGACTTCTGTCTGCTCGTGCTGCATCAATGCTGGAAGCCGAGCGAGATTCACCTAAAAAGTGGAGTCCTGTTATGGAGTTGCAGTACAGAGGCGGCGTTTACAGGGGACGATGCCAAGGAGGGCTTCCCGAAGGGAAGGGCCGTCTAGTACTTCAAGATGGGAGCATATATGATGGTATGTGGCGCTATGGTATGAGATCAGGTCAAGGTACAGTCTACTTCAACAATGGAGATATGTTTCAAGGATCATGGAGAGATGATGTCATGCATGGAAAGGAGCCTTTCATTGAACTGACACAAATCCCATGTGTTATCAGGGCTGGTTTTATTTTCACACAGGGGATCGATGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTCTACTCAAGGTCAGGCGATGTTCTATTTGGTCATTTCCAAGATGGTTGGCGTCATGGCGACTTTCTTTGCATTAATGTTGACGGTTCAAGGTTGA 2217 42.31 MVPLITELPVINGFHPLLRSSLCRYPCSSIRSLFFRRRKMFLGLAGYRNSYPFLSTTANSSLSNAAGRANMEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISSLRFWQIVKHDSLKVQLLQRFIGKDYNPRMIDVPLSLQSCSKAVILVVSAGYGLDYSAAVDILRTVRSANGFTVTIVLKPFSFEGQRRQDEVKHLVGRLKEHTSFLIDIDTDRLLEKDLVTLDEAVRSANSAVLMAINSISIIKSEMLTKFIDEPQNSVKELGVIDVMEDLKGAVLCIVASSSIIDDNDKSTLLKTFREVTAYTGKVILSIIQDLNLEPNFLMTTILIVGSTKQQSSKSSSILSRLAQRFPSVFKLLWKPQEPLEEAEESDMPEDANPSNVRESSDSDMVITQIASEGLDKIFYQDPENLQTTFNYSDLLSSRGTNDSDFEQPEAGIVETDVNSLPFSNAVSRGASFRRDPLHRWNLGPAHQIAQQWARERAADAELASAFDSISIFDLPVGVRPSEELKDKSTPNPEMKYEKKSKASITTSRFSSQTSLTDTSLEVIKEFYDTSSAFLRGKSPDLPKKQGLLSARAASMLEAERDSPKKWSPVMELQYRGGVYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGSWRDDVMHGKEPFIELTQIPCVIRAGFIFTQGIDGLQTSGRERLMEKVASTQGQAMFYLVISKMVGVMATFFALMLTVQG 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4567382 4583685 + CmoCh15G009050.1 Cmo15g00905 398413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00905 738 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 275 668 - -
Cmo15g00905 738 SMART morn 608 629 IPR003409 -
Cmo15g00905 738 SMART morn 631 652 IPR003409 -
Cmo15g00905 738 SUPERFAMILY Tubulin nucleotide-binding domain-like 83 248 IPR036525 -
Cmo15g00905 738 Pfam MORN repeat 633 655 IPR003409 -
Cmo15g00905 738 Pfam MORN repeat 656 668 IPR003409 -
Cmo15g00905 738 Pfam MORN repeat 615 631 IPR003409 -
Cmo15g00905 738 MobiDBLite consensus disorder prediction 370 393 - -
Cmo15g00905 738 Gene3D Tubulin/FtsZ, GTPase domain 124 336 IPR036525 -
Cmo15g00905 738 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 607 669 - -
Cmo15g00905 738 PANTHER PROTEIN ACCUMULATION AND REPLICATION OFS PROTEIN 275 668 - -
Cmo15g00905 738 Gene3D - 612 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00905 - - - csv:101217933 1071.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00905 Cmo-Chr15:4567382 Cmo15g00721 Cmo-Chr15:3520575 1.53E-06 dispersed
Cmo16g00958 Cmo-Chr16:6345638 Cmo15g00905 Cmo-Chr15:4567382 5.35E-06 dispersed
Cmo15g00905 Cmo-Chr15:4567382 Cmo06g00401 Cmo-Chr6:1943470 9.10E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00905 Cmo_Chr15 FPKM 65.870262 67.202347 34.368008 33.907185 114.838219 80.658615 107.945229 40.702652 43.298084 39.416138