Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00908 ATGGCGTCGTCTAATTCTTGTTCCAAAGCCCATGAATCCGTACAATCATCACCATTTGCTTCTCGCTATGTTCAAAACCCAACCCCAAAATTTGTAATGCCTGAAAACTCCATGTCCAAGGAGGCAGCAGCTCAGATCATCAACGACGAGCTCATGCTAGATGGCAACCCACGTCTCAATTTGGCATCCTTCGTCACCACATGGATGGAGCCCGAATGCGACAAGCTCATCATGGACTCAATCAATAAAAACTACGTCAATATGGACGAGTACCCTGTTACCACCGAGATTCAAAATCGGTGTATCAACATGATCGCCCATTTATTCAACGCTCCATTGGGAGATTCCGATGTTGCGGTGGGAGCTGGGACGGTGGGGTCGTCAGAAGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAGCAAGCGGAAGAGTGAAGGGAAGGCTTTTGATAAGCCTAATCTTGTGACGGGTGCTAATTTTCATGTTTGTTGGGAGAAATTTTGTAGGTATTTTGAAGTGGAGTTAAGGGAAGTTAAAGTTAGAGAAGGGTATTATGTTATGGACCCTTTTGAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTTCAATTTTTGGTTCCACTTACAATGGGGAATTTGAAGATGTGAAGGTGTTGAATGATTTGTTGATGAAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCGGCTAGTGGTGGGTTCATAGCGCCGTTCTTGTATCCAGAGCTGGAATGGGACTTCCGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGGCACAAGTATGGGCTTGTGTATGCTGGGATTGGGTGGGTCATTTGGAGAACTAGACAAGACTTGCCTCAACAACTCATTTTTCATATTGATTATCTTGGAGCTCATCAGTCTACCTTCACTCTTAACTTCTCTAAAGGGTCCAGCCAGGTGATTGCTCAATATTATCAATTAATTCGTCTGGGTTTTGAGGGATACCGCAAGGTGATGCAAAACTGTCGCGACAATGCCATGGCATTGAAGGAAGGACTACAAAACACGGGGCGATTCACAATAGTGTCAAAGGACATCGGCGTGCCAGTGGTGGCATTTTGCCTCAAAGACCGAAGTACCCACGACGAGTTTGAGGTGTCGGAGATGTTGCGGCGGTTCGGGTGGATTGTGCCCGCGTATCGAATGCCTAAGGGAGCCAAGCATGTATCCGTTCTTCGTGTTGTGGTTAGAGAAGATTTCTCCCGCGCCCTTGCAGAGCGGCTTTTGGTTGATATCATTAAGGTGTTGGCGGAGCTTGATACTCTTCCACCCAAAAGTGCTGCGAAAGCCATCGCCTTGGCGAAGGACGAGGATGCAGCGAATGATAGCGCAGTGAAGAAGACGGCAGAGGAGACAGAAATGGAAATTGTGAATGCTTGGATCGACATGATAACAAAGGCTACCAAAATCACTTGTTGCTGA 1500 46.8 MASSNSCSKAHESVQSSPFASRYVQNPTPKFVMPENSMSKEAAAQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVNMDEYPVTTEIQNRCINMIAHLFNAPLGDSDVAVGAGTVGSSEAIMLAGLAFKRKWQSKRKSEGKAFDKPNLVTGANFHVCWEKFCRYFEVELREVKVREGYYVMDPFEAVEMVDENTICVASIFGSTYNGEFEDVKVLNDLLMKKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTRQDLPQQLIFHIDYLGAHQSTFTLNFSKGSSQVIAQYYQLIRLGFEGYRKVMQNCRDNAMALKEGLQNTGRFTIVSKDIGVPVVAFCLKDRSTHDEFEVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRALAERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMITKATKITCC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4596553 4598813 - CmoCh15G009080.1 Cmo15g00908 398416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00908 499 Gene3D - 362 449 - -
Cmo15g00908 499 PANTHER GLUTAMATE DECARBOXYLASE 3 493 - -
Cmo15g00908 499 PANTHER GLUTAMATE DECARBOXYLASE 3 493 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo15g00908 499 SUPERFAMILY PLP-dependent transferases 19 445 IPR015424 -
Cmo15g00908 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 382 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo15g00908 499 Gene3D - 67 361 IPR015421 GO:0003824
Cmo15g00908 499 Gene3D - 1 66 - -
Cmo15g00908 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 18 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02255 Cmo15g00908 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02380 Cmo-Chr4:17741623 Cmo15g00908 Cmo-Chr15:4596553 0 dispersed
Cmo04g02558 Cmo-Chr4:18750637 Cmo15g00908 Cmo-Chr15:4596553 1.86E-08 dispersed
Cmo15g00608 Cmo-Chr15:2953267 Cmo15g00908 Cmo-Chr15:4596553 2.95E-09 dispersed
Cmo15g00790 Cmo-Chr15:3875072 Cmo15g00908 Cmo-Chr15:4596553 0 dispersed
Cmo15g00908 Cmo-Chr15:4596553 Cmo15g00910 Cmo-Chr15:4609679 0 proximal
Cmo08g00169 Cmo-Chr8:966664 Cmo15g00908 Cmo-Chr15:4596553 1.89E-12 transposed
Cmo15g00908 Cmo-Chr15:4596553 Cmo04g02255 Cmo-Chr4:16877971 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00908 K01580 - csv:101208026 818.92