Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00912 ATGGAAAGAACTGTCTTTCACCTTTCACTTCTTCCTCTTGCTTTGCCACTGATCTTTATCTTCTTTGATTTGGCTTCATCAGCAGAGCAACAGGTCGCGACTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAGGGCTTTGATTGAGAAGGACCCAAATGGAGTATTGACCAATTGGAAGCTTGAAAACGATCCATGTTCTTGGTATGGAGTTTCATGCCAATCTGGACGAGCGGTTGCTCTTGATCTGAGCGGCTGTAATCTTGCAGGGAATGTTTATTTTGATCCTCTGTCTTCTATGGATATGTTGTTGTCTTTGAACTTGTCTACAAATTCTTTCACTATAAACTCAACCACTTTGCTTCAACTTCCTAATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTCGTGTGCCTGATAGTCTTTTCTCAAGCTGTCCAAATCTTGTGTTTGTGGATCTTTCATTCAACAACTTGACTGCCTCTCTGCCTGAAAATCTTCTGTTCAATGCTAATAAGCTTCAAGATCTTGATCTCTCTTACAATAATCTAACAGGGTCCATCTCAGGATTGAGAATTCATGAGAATTCTTGCAATTCTTTGTTGCGAGTTGAACTTTCAGCTAATCAAATCGTTGGTTCGATTCCGAGTTCAATTTCGAACTGCACGAATCTGCAAACACTTGGTTTGTCATACAATTCTCTCAGTGGGGAAATCCCAGGATCTATAGGGAAACTCAGTAGTTTACAAAGGGTGGATCTATCTCATAACCAGCTCACTGGTTGGCTCCCTTTTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAAGCTTTGTTACAACAACATTTCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGTTCTTCCCTTCAGATTCTGGATCTTTCAAACAACAACATATCTGGTCCTTTACCAGATGCCATCTTCAAGAATCTTGTCTCTTTACAGAGCTTGTTATTGAGTAATAACATAATCTCTGGATCATTGCCTTCATCCATATCTCACTGCAAGAAACTTCAGCTTGTGGACTTAAGTTCCAATAGAATTTCTGGTTTAATCCCACCAGATATATGCCCAGGAGCTGAATCACTCCAGGAACTGAAAATGCCAGACAATCTCATCGTAGGAGGAATCCCACCAGAACTCTCGTTGTGTTCACAGTTAAAGACAATTGATTTTAGTCTAAACTATCTGAATGGCTCCATACCTGCAGAACTTGGAAGGCTTCAGAATCTTGAACAGTTGATAGCATGGTTCAATAGCTTAGAAGGGAAAATCCCACCAGAATTAGGAAAGTGTAGAAGCTTGAAGGATCTTATACTGAATAATAATCGTTTAAGTGGCGAAATCCCCACTGAATTGTTCAGTTGTAGCAATCTTGAATGGGTTTCACTCACTAGTAATGAACTCAATGGTGAAGTCCCAAAAGAGTTTGGTCTTTTGTCAAGGCTGGCTGTGCTGCAACTCGGGAACAATAGCTTAAGTGGTCAGATACCAGGAGAGTTGGCAAACTGCAGCACTTTAGTTTGGATGGATTTAAACAGCAATAAGCTTACAGGGGAAATCCCTCCTAGACTTGGGAGGCAGCTTGGAGCCAAGTCATTGAATGGGATTCTTTCTGGAAACACTTTAGTGTTCGTCCGAAATGTTGGGAATTCGTGTAAAGGAGTTGGGGGTTTGTTGGAGTTTGCTGGAATTAGACCTGAAAGACTACAGCAGGAACCAACACTAAAGACCTGTGATTTCACTAGACTGTACTCTGGTCCGGTTCTAAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCCTTGCAGGTTCTTGAATTATCACACAACCAACTTTCTGGAGAGATTCCGACCTCGTTCGGCCGCTTAAAGAACTTGGGAGTGTTTGATGCATCACATAACAGACTGCAGGGTCATATTCCAGATTCATTCTCAAACTTATCATTCTTAGTTCAAATTGATCTATCTTACAATGAACTAACAGGGAGAATTCCATCAAGGGGGCAGCTCAGTACACTGCCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCCTTGCCTGAATGCCAGAGTGAGGACCAGCCACTGACAAGTCCTAACGTTGAGCCTGGAAAAGGAAGAACAAAGGCAGAAGTAGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTTATTTCCATTGCCAGTGTCTGCATTTTGATTGTATGGGCTATTGCCATGAGGACAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTCAATAGTTTACAAGCAATACATGCTCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCATTGAGTATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAACTCAAATTCTCCCAACTGATTGAAGCTACTAATGGCTTCTCAGCCGAAAGTCTCATCGGGAGTGGCGGGTTCGGTGAAGTGTTTAAGGCAACGCTAAAGGATGGATCGAGTGTTGCAATCAAGAAACTGATACGTCTTAGTTGCCAGGGAGACCGTGAATTCATGGCAGAAATGGAAACTTTAGGAAAGATCAAACATGGAAACTTAGTACCTCTTTTGGGTTACTGTAAAATAGGGGAGGAGAGGCTTCTAGTGTATGAGTTCATGGAGTTTGGTAGCCTAGAAGAGATGCTTCACGGAAGAGTAAAGATGCAGGACAGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCTAGAGGTGCTGCAAAAGGACTTTGTTTCCTACATCACAACTGCATTCCACACATAATACATAGAGACATGAAGTCAAGCAATGTACTCCTGGACCATGATTTAGAAGCAAGAGTTTCAGATTTTGGAATGGCTAGGCTGATAAGTGCTCTTGACACTCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAGTACTACCAGAGCTTCAGGTGCACGGCAAAAGGCGATGTCTATTCGTTCGGTGTCGTCCTGTTAGAACTCTTGACAGGGAAACGACCAACAGATAAGGAGGATTTCGGGGACACCAACTTAGTGGGATGGGTGAAAATGAAAGTAAATGATGGAAAACAAATGGAAGTGATTGATCCAGAATTGCTGTCGGTAACCAAAGCAAGCGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGGTTAGATATTTGGAGATAACTCTTCGGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGGCCATGCTGCGAGAATTGATGCCTGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 3408 42.14 MERTVFHLSLLPLALPLIFIFFDLASSAEQQVATSIKTDAAALLKFRALIEKDPNGVLTNWKLENDPCSWYGVSCQSGRAVALDLSGCNLAGNVYFDPLSSMDMLLSLNLSTNSFTINSTTLLQLPNNLQQLELSLAKVVGRVPDSLFSSCPNLVFVDLSFNNLTASLPENLLFNANKLQDLDLSYNNLTGSISGLRIHENSCNSLLRVELSANQIVGSIPSSISNCTNLQTLGLSYNSLSGEIPGSIGKLSSLQRVDLSHNQLTGWLPFDWRNACNSLQELKLCYNNISGVIPASFSACSSLQILDLSNNNISGPLPDAIFKNLVSLQSLLLSNNIISGSLPSSISHCKKLQLVDLSSNRISGLIPPDICPGAESLQELKMPDNLIVGGIPPELSLCSQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDLILNNNRLSGEIPTELFSCSNLEWVSLTSNELNGEVPKEFGLLSRLAVLQLGNNSLSGQIPGELANCSTLVWMDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPTSFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPLTSPNVEPGKGRTKAEVGSWVNSIVLGVLISIASVCILIVWAIAMRTRRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRVKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVAMLRELMPGSTNGSSNSA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4628864 4632271 + CmoCh15G009120.1 Cmo15g00912 398420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00912 1135 Gene3D Ribonuclease Inhibitor 38 150 IPR032675 -
Cmo15g00912 1135 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Cmo15g00912 1135 Gene3D Transferase(Phosphotransferase) domain 1 914 1133 - -
Cmo15g00912 1135 Gene3D Phosphorylase Kinase; domain 1 799 913 - -
Cmo15g00912 1135 SMART serkin_6 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00912 1135 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515
Cmo15g00912 1135 Pfam Leucine rich repeat 278 336 IPR001611 GO:0005515
Cmo15g00912 1135 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Cmo15g00912 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Cmo15g00912 1135 Pfam Protein kinase domain 840 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00912 1135 Gene3D - 552 608 - -
Cmo15g00912 1135 CDD STKc_IRAK 844 1123 - -
Cmo15g00912 1135 SUPERFAMILY RNI-like 209 539 - -
Cmo15g00912 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Cmo15g00912 1135 Gene3D Ribonuclease Inhibitor 176 727 IPR032675 -
Cmo15g00912 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 1124 - -
Cmo15g00912 1135 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524
Cmo15g00912 1135 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 1124 - -
Cmo15g00912 1135 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Cmo15g00912 1135 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Cmo15g00912 1135 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00912 1135 SUPERFAMILY L domain-like 37 269 - -
Cmo15g00912 1135 PRINTS Leucine-rich repeat signature 179 192 - -
Cmo15g00912 1135 PRINTS Leucine-rich repeat signature 251 264 - -
Cmo15g00912 1135 SMART LRR_typ_2 447 470 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 494 518 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 325 349 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 422 446 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 251 274 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 300 324 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 151 175 IPR003591 -
Cmo15g00912 1135 SMART LRR_typ_2 634 658 IPR003591 -
Cmo15g00912 1135 SUPERFAMILY L domain-like 595 723 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02248 Cmo15g00912 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00789 Cmo-Chr7:3611442 Cmo15g00912 Cmo-Chr15:4628864 0 dispersed
Cmo15g00912 Cmo-Chr15:4628864 Cmo16g00143 Cmo-Chr16:650920 1.60E-42 dispersed
Cmo15g00912 Cmo-Chr15:4628864 Cmo04g02248 Cmo-Chr4:16807180 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74923 PF00069 Pkinase 1.10E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00912 - - csv:101208987 2037.69