Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00913 | ATGTTGAAACCTTCTTGTTCTTCTTCTTCTTCTGCAGCAGCAGCAGCAGCAGCCTCAGCAGCATCCACACCTTATTCTTCTGCTGCCCCTCCTCTTCCTCCTCCTCCTCCCAATTCCGACCATGGCCTCACCACCAAAAGAAAAAGAAGACCCGCCGGCACTCCAGATCCGGATGCTGAACTCGTTTCATTCATTTTCTTATTAGATCCGGATGCTGAAGTCGTTTCCTTATCCCCCAAAACCCTTCTCGAATCCGATCGCTACGTTTGTGAGATATGCAACCAAGGCTTCCAAAGGGATCAGAATCTCCAAATGCACCGCCGCCGCCACAAGGTACCTTGGAAGCTACTCAAGAAGCCACACACGGTGGATGCCATAAAAAAAAAGGTCTTTGTTTGCCCCGAGCCGACATGTCTCCACCACGACCCTTGCCATGCCCTTGGTGACCTCGTCGGCATCAAAAAACACTTCCGCAGAAAACACAGCAACCAAAAGCACTGGGTTTGTGACAAATGCTCTAAAGCTTATGCTGTTCATTCCGATTTCAAAGCTCACCTCAAAACTTGCGGCACCCGTGGCCATTCCTGTGATTGTGGCCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAACACCAAGACGCTTGCAATATCCGCCAGATGAGGTCCGATCAGTGGCAGCTCATGCCATTATCACTCCCATTACTACAAACCGCTAATCCACTACGAGGGTTTCCAATTTTATCATCAAACAAAGACCATGATCTCAATCTCCATCTCTCTTCTCCAAGCTCAGCCTTTTTGAATCTCTCAATTGGGTCCAACAAGGAGCCGAACGACAAGTGTCAGCTCGAGCTCGCAATCGAGGAGAAAGCATACGCAGACGAAGCAAGACGAGACGCGAAGCGACAAATCGAAATCGCCGAGGTTGAGTTTACCAATGCCAAAATGATAAGGCAGCAAGCTCAAGCGGAATTGGAAAAAGCAAGGATCTTGAAGGAAGAAGCCAGCCGGAAAATGAGCTCCACCATTATGGAAATCACATGTGAAACTTGTCGGTTACATTTTCACATGAGCTCCATCGCAGCAGCCGAGGAGACCTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGATGGAGAATAA | 1152 | 48.96 | MLKPSCSSSSSAAAAAAASAASTPYSSAAPPLPPPPPNSDHGLTTKRKRRPAGTPDPDAELVSFIFLLDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKKPHTVDAIKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNIRQMRSDQWQLMPLSLPLLQTANPLRGFPILSSNKDHDLNLHLSSPSSAFLNLSIGSNKEPNDKCQLELAIEEKAYADEARRDAKRQIEIAEVEFTNAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCETCRLHFHMSSIAAAEETSLAISYMSSATTEGDGE | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 4635933 | 4637660 | - | CmoCh15G009130.1 | Cmo15g00913 | 398421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00913 | 383 | MobiDBLite | consensus disorder prediction | 17 | 56 | - | - | |
Cmo15g00913 | 383 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 88 | 110 | IPR013087 | - | |
Cmo15g00913 | 383 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 90 | 110 | IPR013087 | - | |
Cmo15g00913 | 383 | SMART | c2h2final6 | 88 | 110 | IPR013087 | - | |
Cmo15g00913 | 383 | SMART | c2h2final6 | 131 | 161 | IPR013087 | - | |
Cmo15g00913 | 383 | SMART | c2h2final6 | 167 | 194 | IPR013087 | - | |
Cmo15g00913 | 383 | PANTHER | OS03G0310200 PROTEIN | 69 | 228 | IPR039288 | GO:0009630 | |
Cmo15g00913 | 383 | PANTHER | OS03G0310200 PROTEIN | 22 | 64 | IPR039288 | GO:0009630 | |
Cmo15g00913 | 383 | Gene3D | Classic Zinc Finger | 152 | 226 | - | - | |
Cmo15g00913 | 383 | PANTHER | OS03G0310200 PROTEIN | 275 | 383 | IPR039288 | GO:0009630 | |
Cmo15g00913 | 383 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 275 | 383 | - | - | |
Cmo15g00913 | 383 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 69 | 228 | - | - | |
Cmo15g00913 | 383 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 22 | 64 | - | - | |
Cmo15g00913 | 383 | SUPERFAMILY | beta-beta-alpha zinc fingers | 85 | 111 | IPR036236 | - | |
Cmo15g00913 | 383 | Gene3D | Classic Zinc Finger | 69 | 131 | - | - | |
Cmo15g00913 | 383 | Coils | Coil | 314 | 338 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02246 | Cmo15g00913 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00055 | Cmo-Chr10:258002 | Cmo15g00913 | Cmo-Chr15:4635933 | 1.44E-16 | dispersed | |
Cmo13g01208 | Cmo-Chr13:9482716 | Cmo15g00913 | Cmo-Chr15:4635933 | 1.52E-140 | dispersed | |
Cmo15g00913 | Cmo-Chr15:4635933 | Cmo18g00067 | Cmo-Chr18:451754 | 3.82E-124 | dispersed | |
Cmo04g02247 | Cmo-Chr4:16802386 | Cmo15g00913 | Cmo-Chr15:4635933 | 5.55E-90 | transposed | |
Cmo15g00913 | Cmo-Chr15:4635933 | Cmo04g02246 | Cmo-Chr4:16801358 | 3.14E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11182 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00913 | K25871 | - | csv:101210468 | 560.066 |