Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00913 ATGTTGAAACCTTCTTGTTCTTCTTCTTCTTCTGCAGCAGCAGCAGCAGCAGCCTCAGCAGCATCCACACCTTATTCTTCTGCTGCCCCTCCTCTTCCTCCTCCTCCTCCCAATTCCGACCATGGCCTCACCACCAAAAGAAAAAGAAGACCCGCCGGCACTCCAGATCCGGATGCTGAACTCGTTTCATTCATTTTCTTATTAGATCCGGATGCTGAAGTCGTTTCCTTATCCCCCAAAACCCTTCTCGAATCCGATCGCTACGTTTGTGAGATATGCAACCAAGGCTTCCAAAGGGATCAGAATCTCCAAATGCACCGCCGCCGCCACAAGGTACCTTGGAAGCTACTCAAGAAGCCACACACGGTGGATGCCATAAAAAAAAAGGTCTTTGTTTGCCCCGAGCCGACATGTCTCCACCACGACCCTTGCCATGCCCTTGGTGACCTCGTCGGCATCAAAAAACACTTCCGCAGAAAACACAGCAACCAAAAGCACTGGGTTTGTGACAAATGCTCTAAAGCTTATGCTGTTCATTCCGATTTCAAAGCTCACCTCAAAACTTGCGGCACCCGTGGCCATTCCTGTGATTGTGGCCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAACACCAAGACGCTTGCAATATCCGCCAGATGAGGTCCGATCAGTGGCAGCTCATGCCATTATCACTCCCATTACTACAAACCGCTAATCCACTACGAGGGTTTCCAATTTTATCATCAAACAAAGACCATGATCTCAATCTCCATCTCTCTTCTCCAAGCTCAGCCTTTTTGAATCTCTCAATTGGGTCCAACAAGGAGCCGAACGACAAGTGTCAGCTCGAGCTCGCAATCGAGGAGAAAGCATACGCAGACGAAGCAAGACGAGACGCGAAGCGACAAATCGAAATCGCCGAGGTTGAGTTTACCAATGCCAAAATGATAAGGCAGCAAGCTCAAGCGGAATTGGAAAAAGCAAGGATCTTGAAGGAAGAAGCCAGCCGGAAAATGAGCTCCACCATTATGGAAATCACATGTGAAACTTGTCGGTTACATTTTCACATGAGCTCCATCGCAGCAGCCGAGGAGACCTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGATGGAGAATAA 1152 48.96 MLKPSCSSSSSAAAAAAASAASTPYSSAAPPLPPPPPNSDHGLTTKRKRRPAGTPDPDAELVSFIFLLDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKKPHTVDAIKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNIRQMRSDQWQLMPLSLPLLQTANPLRGFPILSSNKDHDLNLHLSSPSSAFLNLSIGSNKEPNDKCQLELAIEEKAYADEARRDAKRQIEIAEVEFTNAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCETCRLHFHMSSIAAAEETSLAISYMSSATTEGDGE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4635933 4637660 - CmoCh15G009130.1 Cmo15g00913 398421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00913 383 MobiDBLite consensus disorder prediction 17 56 - -
Cmo15g00913 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Cmo15g00913 383 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Cmo15g00913 383 SMART c2h2final6 88 110 IPR013087 -
Cmo15g00913 383 SMART c2h2final6 131 161 IPR013087 -
Cmo15g00913 383 SMART c2h2final6 167 194 IPR013087 -
Cmo15g00913 383 PANTHER OS03G0310200 PROTEIN 69 228 IPR039288 GO:0009630
Cmo15g00913 383 PANTHER OS03G0310200 PROTEIN 22 64 IPR039288 GO:0009630
Cmo15g00913 383 Gene3D Classic Zinc Finger 152 226 - -
Cmo15g00913 383 PANTHER OS03G0310200 PROTEIN 275 383 IPR039288 GO:0009630
Cmo15g00913 383 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 275 383 - -
Cmo15g00913 383 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 69 228 - -
Cmo15g00913 383 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 22 64 - -
Cmo15g00913 383 SUPERFAMILY beta-beta-alpha zinc fingers 85 111 IPR036236 -
Cmo15g00913 383 Gene3D Classic Zinc Finger 69 131 - -
Cmo15g00913 383 Coils Coil 314 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02246 Cmo15g00913 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00055 Cmo-Chr10:258002 Cmo15g00913 Cmo-Chr15:4635933 1.44E-16 dispersed
Cmo13g01208 Cmo-Chr13:9482716 Cmo15g00913 Cmo-Chr15:4635933 1.52E-140 dispersed
Cmo15g00913 Cmo-Chr15:4635933 Cmo18g00067 Cmo-Chr18:451754 3.82E-124 dispersed
Cmo04g02247 Cmo-Chr4:16802386 Cmo15g00913 Cmo-Chr15:4635933 5.55E-90 transposed
Cmo15g00913 Cmo-Chr15:4635933 Cmo04g02246 Cmo-Chr4:16801358 3.14E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11182 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00913 K25871 - csv:101210468 560.066