Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00925 ATGAGATCCGAGCTAGCAAATATTTGCGATGGAGATTTTCTTCCCCTTCCCACCATTTTGATTCTCTCTACCTCCCACACAGTGAAGAGAGTTGAAGCTGTTTCCACTCTTCTCTGTTTTGTTAATGGAGGAGGAGCCTACTTCTCCAAACAACAAACAAGAAAGGGAAATAACAATCGGGGGGAGATATTGAAGAAATCCCATGTGAAATTCTGCGGTAAAAGCCACTCCGGATCGATCTGTGGAGGACCTTCTTCCTCCTCCATCATCTCTGCACACCATTGGTTGCATTTTCCATCTTTTGTGATACCCAGGAGAAACTGTGGGAGGAGTTTTCAGAAAGAAAGTGAGCGAGCTCAAGAATGTTGCCGGTTCTTCAGGAATGAAGAAGAAAAGGAAGTGAAAATGCAGGTGAGCGATAACTCTGTGGGTTTGAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTGTTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATATCAAAGTGAGGAGGAATGAAGTGTTGGGGAGTATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAATGTTAGTGTTAACCATGTTCATGCCTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAGCCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACGGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCGGAGAGGGATATCTTCGAAAAGCAACACGGGTGGATGATAAGAACAATGGAAAAGGAACCTTCACCCATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCGTTGGATATGATGAGAGGTAGAGCAAATGTTGCTATTCTAGCTTATATATTGGATAAAAATGGCATGTCTGTATATATCGTTTTGCCTTCCTCATTTGGTAGATTGCTTCTCTCTGATGCGACGCAGGAGGACCGGGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGACCCTTCAGGCTGCTGGGTTCCCATCATCTTGGAGTTGTTTTGACATTTCCTGTTTACAAATCCAAATTGCCATCCATACCGACTGAAGAAGAACGGATAGAAGCAACAGCAGGCTACGTTGGCGGAGCCTTTGATGTTGAGTCACTCGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACGAACTCTTCTGATCTTCTCGTGATGTATGGTCATCAATATCAAGATGGTGACTTGTCGCTTTCGCATGAGAGCAGCCTTGATTTCGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTAACTACTGCATTCTTATTCTTCGTGATCGGTTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATAAAATGCAAGTACTGAAAGTTCGAGCGGAGGCTGCCGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGGACACCAATGAATGGCATCCTCGGTGCGTATATTCCTGTCTCGCTTTGCTTTTACCGAATGAGCTCGTTTTACATGTACAAAGGATACTCAAATCTATTATCTTTGTATGCATCAATTTCAGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCCACACAGAAGGATTATGCTCAAACTGCCCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTCGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTTGATGACGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGAATTCAAAAGTCTCCATGGACAAGGAATATGTCAACGGAATATCCGATAGTGGCTTATTCGTATTGGATGGTCGTGAATTTCAAACTTTGAGTGGACGCGAGGCAGCCGATGATCAGAACAGTTGGGATAACTTCAAGCATCTAATCGCTGACGACAACTTCCAGTCGAATGCCGCTCCAAACAACACAGCAGTTACCAACAAGGGTTGTGATAATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCACGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGAGGGACTGGTATTGGTTTGAGTATCAGCAAATGTTTAGTTGAGTTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTATTTGGAAAATGTAAGAAAAACTCAATGAATGATATGAAAAAGCCCAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAGTAGTTGATAGCAAACATGTTAGAGCTTCTGTAACTAGATATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAATAGCATCAACATGGCAGCTTCTTTATTCAGAGAAAATGGATCCACACTACCAGGAAACACAATCCTTCCAGATATGATCTTAGTTGAAAAGGACATACTAAATTCTGATGAGGAATGTGGGATCATTCGTCAACTGAACTGGAAACCGAACGGTAGTTCGGTTAAGTTTCCAAAGCTGATCCTTCTCGCTACCAATATTGCCACTGCTGAACTAGACAAGGCAAGAGCATCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTGAGGGCGACTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGCCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACCGAGTAAACCGTCGGGTCGCTGCAGGTGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGAAAATCTGCCCTGAAGTTGCTTCAGCTGCCGCATAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCGTATCAGGACGATGGAGGTCGAGGCAAACAAAGGAGGATTGTCTGCAGCAGAAGGCAAATGCCCTATACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACGTACGAAGAATGCCTGAAATGCGGTATGAATGGCTACGTCTCGAAACCGTTTGAAGAAGAAAATCTATACAAGGAAGTTGCCAGATTTTTCAAAAAACCATAG 3555 42.93 MRSELANICDGDFLPLPTILILSTSHTVKRVEAVSTLLCFVNGGGAYFSKQQTRKGNNNRGEILKKSHVKFCGKSHSGSICGGPSSSSIISAHHWLHFPSFVIPRRNCGRSFQKESERAQECCRFFRNEEEKEVKMQVSDNSVGLKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPIRDEYAPVIFSQETVSYIESLDMMRGRANVAILAYILDKNGMSVYIVLPSSFGRLLLSDATQEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHKMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGAYIPVSLCFYRMSSFYMYKGYSNLLSLYASISGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDKEYVNGISDSGLFVLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAAPNNTAVTNKGCDNVTLMVSVEDTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINMAASLFRENGSTLPGNTILPDMILVEKDILNSDEECGIIRQLNWKPNGSSVKFPKLILLATNIATAELDKARASGFADTVIMKPLRATMVAACLQQVLGVKNQRRPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLSAAEGKCPIPILAMTADVIHATYEECLKCGMNGYVSKPFEEENLYKEVARFFKKP 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4707929 4714450 + CmoCh15G009250.1 Cmo15g00925 398433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00925 1184 SUPERFAMILY CheY-like 1050 1181 IPR011006 -
Cmo15g00925 1184 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 634 870 IPR036890 -
Cmo15g00925 1184 CDD PDC1_HK_sensor 330 398 - -
Cmo15g00925 1184 CDD HATPase_EvgS-ArcB-TorS-like 697 873 - -
Cmo15g00925 1184 Gene3D - 1046 1183 - -
Cmo15g00925 1184 ProSiteProfiles Histidine kinase domain profile. 554 875 IPR005467 -
Cmo15g00925 1184 PANTHER TWO-COMPONENT HISTIDINE KINASE 357 1183 - -
Cmo15g00925 1184 PANTHER TWO-COMPONENT HISTIDINE KINASE 153 323 - -
Cmo15g00925 1184 Gene3D - 520 572 - -
Cmo15g00925 1184 Gene3D - 596 643 - -
Cmo15g00925 1184 Pfam Response regulator receiver domain 1053 1177 IPR001789 GO:0000160
Cmo15g00925 1184 SMART HKATPase_4 692 875 IPR003594 -
Cmo15g00925 1184 ProSiteProfiles CHASE domain profile. 239 486 IPR006189 -
Cmo15g00925 1184 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 536 569 IPR036097 GO:0000155|GO:0007165
Cmo15g00925 1184 ProSiteProfiles Response regulatory domain profile. 900 1030 IPR001789 GO:0000160
Cmo15g00925 1184 SMART REC_2 1051 1177 IPR001789 GO:0000160
Cmo15g00925 1184 SMART HisKA_10 547 645 IPR003661 GO:0000155|GO:0007165
Cmo15g00925 1184 CDD HisKA 547 641 IPR003661 GO:0000155|GO:0007165
Cmo15g00925 1184 Pfam CHASE domain 357 457 IPR006189 -
Cmo15g00925 1184 Pfam CHASE domain 242 335 IPR006189 -
Cmo15g00925 1184 SMART CHASE_2 239 459 IPR006189 -
Cmo15g00925 1184 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 692 872 IPR003594 -
Cmo15g00925 1184 ProSiteProfiles Response regulatory domain profile. 1052 1181 IPR001789 GO:0000160
Cmo15g00925 1184 CDD REC_hyHK_CKI1_RcsC-like 1053 1177 - -
Cmo15g00925 1184 Gene3D - 644 877 IPR036890 -
Cmo15g00925 1184 Coils Coil 630 650 - -
Cmo15g00925 1184 Gene3D - 190 242 - -
Cmo15g00925 1184 Gene3D CHASE domain 243 493 IPR042240 -
Cmo15g00925 1184 PANTHER HISTIDINE KINASE 4 357 1183 - -
Cmo15g00925 1184 PANTHER HISTIDINE KINASE 4 153 323 - -
Cmo15g00925 1184 PRINTS Bacterial sensor protein C-terminal signature 835 853 IPR004358 GO:0016310|GO:0016772
Cmo15g00925 1184 PRINTS Bacterial sensor protein C-terminal signature 818 828 IPR004358 GO:0016310|GO:0016772
Cmo15g00925 1184 PRINTS Bacterial sensor protein C-terminal signature 859 872 IPR004358 GO:0016310|GO:0016772
Cmo15g00925 1184 PRINTS Bacterial sensor protein C-terminal signature 800 814 IPR004358 GO:0016310|GO:0016772
Cmo15g00925 1184 SUPERFAMILY CheY-like 895 1032 IPR011006 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02235 Cmo15g00925 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00017 Cmo-Chr4:90156 Cmo15g00925 Cmo-Chr15:4707929 0 dispersed
Cmo09g00388 Cmo-Chr9:1701613 Cmo15g00925 Cmo-Chr15:4707929 2.03E-53 dispersed
Cmo15g00925 Cmo-Chr15:4707929 Cmo20g00674 Cmo-Chr20:3286073 0 dispersed
Cmo15g00925 Cmo-Chr15:4707929 Cmo04g02235 Cmo-Chr4:16716157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11185 PF02518 HATPase_c 2.90E-31 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00925 K14489 - csv:101209777 1724.91