Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00927 ATGAGGGAACCCCATTTGGGGTTTGGGGTTTTCCTTTTGATTTTTGTCTTTTTTCTGCTGTTTTTGGATTTCTCTGTTTACGCTCAGCCGGCTGGTGCTGGTGGTGATGATGGGTCAGTGATGAATCTTTTGAAGACTAGTATTGGAGCCCCGGATTCTCTTGGATGGACTGGTTCGAATTACTGTGAATGGAAGCACGTTAAATGTGATTCTCAGAACCGAGTGGTTAAAATTCAAATTGGGAACCAAAATCTCAAGGGATCACTTCCCTCGGATCTCTTTAGCCTCTCGGCGTTAGTGCAATTAGAGGTACAGAGCAATCAGCTGACTGGGCCGTTTCCTAATCTCGCTGATTCACTCCAGATACTTCTAGCGCATGATAATCTGTTTACATCCATGCCGGCTGATTTCTTCGCCAAGAAGTCGGCTCTGCAGACGATAGATGTCGACAATAATCCCTTCATGGCGTGGCAAATTCCTGATAGCATTCGAGATGCTTCTGGTCTTCAGGAATTATCGGCCAATCGCGCTAATGTAACTGGTAACACCCTTCAAATTTTCGATGGCACGACGTTTCCGACTCTTAGGAACTTGCATTTGGCGGGTAATTTTCTTGAAGGTGGATTACCAGTAAGCTTTGCGGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAACTCTAAGTTAAACGGTTCTATCGCCGTATTGCAAAACATGACTAATCTGCAGGAGGTTTGGTTGCATATGAACCACTTTTCAGGTCCTTTGCCCGATTTCTCTAACCTTCAGGGGTTAGAGACCTTGAATTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCGTCCTTGATAAACTTGAAATCCCTCACAGTTGTGAATTTGACGAATAATCTGCTTCAAGGACCCACCCCTGCGTTTAATCCTAATGTAAAGCTGGATATGAGACCAGGATCCAACAATTTTTGCACGGATTCTCCGGGTGAGCCTTGTGATCCCCGAGTGAGTGCTCTGTTATCGGTTGCACAATCAATGGGGTTTCCAACAGTCTTTGCCCAAAGCTGGGTAGGGAACAATCCTTGTGAGGATTTCAAAGGTGTTACATGTACTGGCAACCCCGAAAATATAACCATAATCAACTTTAAGAATATGGGTCTTGCGGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCTGTACAGAAGTTGATTCTCTCTAACAATTATCTTTCTGGCACAATACCAACCGAACTTGTGACTATGCCTAGTCTTATAGAATTAGATGTCTCCAGTAATAGGCTTCATGGGAAAGTGCCCGCCTTCAGGAAAAATGTGATTGTGACCACACAGGGGAACCCGGATATTGGGAAAGATCGACCCAGTTCTCCCGCACCAGGCTCTCCCGAAGAGGGAGCGCCCTCTGATTATGGAACAGGCGACGTTCCTGATGGGGGTGTTAAGAAAAGTAATACTGGAGTGGTTGTTGGTTCTATAATTGGTGTTATTGTTGGTCTCCTTTTAGTTGGGACTGCGATTTTCTTTTGGTACAAGAGAAAGAAGAGACATGGTAGTATAGTTCAGAACCCAAATACAGTAGTGGTACATCCTAGTCATTCTGGGGATCAAAATTCAGTGAAGATTACAGTTACGGAGGCGAGGGCCGATGGGAGTACTCCTGAATCCAGCGGAGTTCCTATTGCTGGACCGAGTGATGTCCGTGTGGTTGAGGCAGGAAACCTGGTTATCTCCATTCAAGTTTTGAGGAATGTAACTAATAATTTTAGCCCTAGTAATATATTGGGGAGAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTACATGATGGTACGAAGATCGCCGTGAAGAGAATGGAGTCTGGAGTCGTAGGCGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCAGTTCTTACTAAGGTTCGTCATAGAAATTTGGTTGCGCTTCTCGGGTATTGCTTAGATGGAAATGAGAGGCTTCTGGTTTATGAATACATGCCCCAGGGGACTTTTAGTAGGTTTCTATTTCACTGGAATGATGAAGGGATCAAACCCCTTGAATGGAAAAGAAGGCTGACTGTTGCCTTGGATGTAGCCAGGGGTGTTGAGTATTTGCATAGTTTGGCACATCAAAGCTTTATCCATCGCGATCTTAAACCATCAAACATTCTTCTTGGAGATGATTTGCGGGCTAAAGTAGCAGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAAGCGTCGGTTGAAACAAGACTCGCAGGAACGTTTGGTTATCTTGCGCCAGAATATGCTGTAACCGGACGAGTTACAACCAAGGTCGATGTTTATAGCTTTGGGGTGATCCTCATGGAGATGATATCTGGTAGAAAAGCAATTGACGAGAGCCAGCCCGAAGAAAGCTTGCACCTTGTATCGTGGTTCCGCAGAATGTACATTAACAAGGACACTTTCTCAAAGGCCATAGACCCTTCAATGCACATAGACGAGGAGACCCTTGGCAGCATCTGCACGGTTGCGGACTTGGCTGGCCACTGCTGTGCAAGGGAGCCATACCAGCGACCCGACATGAGTCACGCAGTCAACGTTCTTTCGTCTCTAGTCGATGTGTGGAAACCAACAGAACCAGACTCGGAAGACACATTGGGAATCGATCTCGAGATGTCGTTACCACAGGCACTTAAGAGATGGCAGGCATTTGAAGGAAATAGCAATTTGGACATGACATCGTCTTCATCAACGTTGCTTGCGAGTGGAGACAATACACAAAGCAGCATCCCAAACCGACCACCTGGTTTTGCAAATTCGTTTACCTCTCTCGACGCACGGTGA 2856 45.55 MREPHLGFGVFLLIFVFFLLFLDFSVYAQPAGAGGDDGSVMNLLKTSIGAPDSLGWTGSNYCEWKHVKCDSQNRVVKIQIGNQNLKGSLPSDLFSLSALVQLEVQSNQLTGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDVDNNPFMAWQIPDSIRDASGLQELSANRANVTGNTLQIFDGTTFPTLRNLHLAGNFLEGGLPVSFAGSSIQSLWLNGQQSNSKLNGSIAVLQNMTNLQEVWLHMNHFSGPLPDFSNLQGLETLNLRDNQLTGIVPSSLINLKSLTVVNLTNNLLQGPTPAFNPNVKLDMRPGSNNFCTDSPGEPCDPRVSALLSVAQSMGFPTVFAQSWVGNNPCEDFKGVTCTGNPENITIINFKNMGLAGSISPSFSLLTSVQKLILSNNYLSGTIPTELVTMPSLIELDVSSNRLHGKVPAFRKNVIVTTQGNPDIGKDRPSSPAPGSPEEGAPSDYGTGDVPDGGVKKSNTGVVVGSIIGVIVGLLLVGTAIFFWYKRKKRHGSIVQNPNTVVVHPSHSGDQNSVKITVTEARADGSTPESSGVPIAGPSDVRVVEAGNLVISIQVLRNVTNNFSPSNILGRGGFGTVYKGELHDGTKIAVKRMESGVVGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFHWNDEGIKPLEWKRRLTVALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASVETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMYINKDTFSKAIDPSMHIDEETLGSICTVADLAGHCCAREPYQRPDMSHAVNVLSSLVDVWKPTEPDSEDTLGIDLEMSLPQALKRWQAFEGNSNLDMTSSSSTLLASGDNTQSSIPNRPPGFANSFTSLDAR 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4719164 4723338 + CmoCh15G009270.1 Cmo15g00927 398435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00927 951 Pfam Leucine rich repeat N-terminal domain 337 371 IPR013210 -
Cmo15g00927 951 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Cmo15g00927 951 MobiDBLite consensus disorder prediction 918 951 - -
Cmo15g00927 951 SMART serkin_6 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00927 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Cmo15g00927 951 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Cmo15g00927 951 CDD STKc_IRAK 602 875 - -
Cmo15g00927 951 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515
Cmo15g00927 951 SUPERFAMILY L domain-like 53 447 - -
Cmo15g00927 951 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00927 951 Gene3D Ribonuclease Inhibitor 36 332 IPR032675 -
Cmo15g00927 951 MobiDBLite consensus disorder prediction 451 486 - -
Cmo15g00927 951 Gene3D Phosphorylase Kinase; domain 1 568 673 - -
Cmo15g00927 951 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Cmo15g00927 951 SUPERFAMILY Protein kinase-like (PK-like) 584 890 IPR011009 -
Cmo15g00927 951 TIGRFAM LPXTG_anchor: LPXTG cell wall anchor domain 492 523 - -
Cmo15g00927 951 Gene3D Transferase(Phosphotransferase) domain 1 674 890 - -
Cmo15g00927 951 Pfam Protein kinase domain 599 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00927 951 PANTHER OSJNBA0070M12.3 PROTEIN 15 951 - -
Cmo15g00927 951 PANTHER RECEPTOR PROTEIN KINASE TMK1 15 951 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00927 - - K00924 csv:101210025 1586.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g00927 Cmo18g00627 CCT
Cmo04g02234 Cmo15g00927 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02385 Cmo-Chr4:17777234 Cmo15g00927 Cmo-Chr15:4719164 0 dispersed
Cmo08g00844 Cmo-Chr8:5447803 Cmo15g00927 Cmo-Chr15:4719164 0 dispersed
Cmo13g00365 Cmo-Chr13:4687777 Cmo15g00927 Cmo-Chr15:4719164 0 dispersed
Cmo15g00779 Cmo-Chr15:3839546 Cmo15g00927 Cmo-Chr15:4719164 0 dispersed
Cmo15g00927 Cmo-Chr15:4719164 Cmo18g00627 Cmo-Chr18:8011555 0 dispersed
Cmo15g00927 Cmo-Chr15:4719164 Cmo04g02234 Cmo-Chr4:16709351 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74924 PF00069 Pkinase 2.70E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00927 Cmo_Chr15 FPKM 14.309174 17.10763 4.699018 4.426078 5.443223 5.366988 5.070446 7.562286 7.282117 7.730928