Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00931 ATGTCTTTCGCCGCCACCCCTCTCTCCATCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTGACATCTCCTCTGTCTCCGGCCGCCGCCCAACTGCCGCCGAAACCCACCAATTTCTCCGCCTTCTCGATATCCCAATCCCCATGGCGGCCGACCCAGAATCTAATTCTTTTCTCCCCCAACTCCCTTTTCGCCGCCGGCTTTCAGCCACTACCAAAAAACTCCAATCTCTTCGTCTTCTCTGTTTGGTACTTCAACATCTCAACGGACAGCGTCGTCTGGTCAGCCAACCAACTTTCTCCGGTCAACCGCTCAGCGGCTTTGGTCATCACGCGCACCGGTCAGCTCCGTCTCGACGACGGTTCCGGTCGCAATCTCTGGCCTTCCAACAGTAATGTTTCTGCAAATCCAAATTCAACCCAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGCACATGGGAAAGCTTCCAATTCCCCACCAATACTATCTTGCCTAACCAGACATTAAATGGAACCACCATCGTCTCCAACAACGGCAAATATGCGTTTAAAAACTCTGTTAATTTGACGTTTGGTGCAGAAAGGTACTGGACCTCTGGAAACCCATTCCAGATTTTCCTGATCGAAGGTCAAATCATCATAAACAATCAAACCCCAATTTTCCCTTCTGATTTTAACTCGACCCGGCTGCGGAAATTGGTGGTCGACGATGATGGAAACCTCAAGATTTTCAGCTTCAGCCCAAATCTACGGCGGTGGGGTGTCGTTTGGCAAGCACATATAGAGTTGTGTGAGATCTTTCATACTTGTGGCCCAAATTCCATCTGTATGAGTACTGGCAGTTACAACTCCACCTACTGTGTCTGTGCTCCCGGATTTATCCCCGATCCTCGCGGCGGAGCACGGCAAGGATGCCACCGGAAACTCAACATATCAAAGATACCCAAATTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGAGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGCCAAGCGAATTGCTTGAAGAATTCCAGCTGCGTGGGCTATACATTCACCTTCGATGGTAGCGCCCAATGTGCGCTTCAGCTTGACATTTTGTCGAACGGGTTGTGGTCGCCAGGGATGAAGATAGCTGCTTTTGTTAAGGTCGACAATTTGGAAACAGATCACTCAAATTTCAACGGAATGATGTACAAACTCCAAACCACATGTCCAGTTCACATCACCATACGGCCGCCGCCGGTGATTAAAGACAACACGACAAGAAACATATTGATAATCAGCACCATATTCATTGCCGAACTAATTTCCGGGGCGGTTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGGCCAAAGCAGTTCACTTACGCCGAGCTAAAGACGGCCACGAATGACTTCTCGACCTGCATCGGAAGGGGCGGATTCGGCGAAGTTTTCAAAGGAGAGCTGCCGGACAAACGCGTGGTCGCCGTTAAGTGCTTGAAAAACGTCGCCGGTGGCGACCGTGACTTTTGGGCGGAGGTAACCATCATCGCTAGGATGCACCATCTGAATCTGCTTCGATTGTGGGGATTCTGCGCGGAAAAGGATAAAAAAATGTTAGTCTACGAACATATTCCCAATGGATCGCTCGATAAATTCCTCTTCCCCAAACCTTTACCCTCCGATTCGGAGAAGAACGAAGCAGAGTTGTCCGATGAAACCCCCTCGCTGGATTGGAACATCCGGCACCGAATCGCAATTGGGGTTGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTGGAATGGGTATTGCATCGTGACATAAAACCAGAGAACATCCTTCTGGACAACGATTTTTGCCCCAAATTGTCGGATTTCGGACTGTCTAAACTGAGGCAAAATGAGGAGACGAGGGTGAGCATGTCTCGGATTAGAGGGACGCCGGGTTACGTAGCGCCAGAGCTGGTGAAGTTGGGATCGAATTGGATGACGACGAAAGCGGATGTGTACAGTTTTGGAATGGTGTTGTTGGAGATTATGAGTGGGCGGAGGAATTGTGAGATGAAAAGATCGACGGTGGAGAGTGCGGAGTGGTACTTCCCTGGATGGGCATTCGAGAAGGCGTTCGTGGAGGAGAGGATGGAGGAGATTTTAGACGATCGGATAAGGGATAAGTGGGAGAGTGGAGGGCATTGGGGGATTGTTAATCGCATGATGCAGACGGCGATGTGGTGTCTTCAAAGCCTACCGGAGAAGAGGCCGTCGATGGGGGAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAGATTGCTCCTCCTGAAAAGCCCTCTATTTACTTCTTGTCCGAACACCCTACCAGTACATGA 2424 49.59 MSFAATPLSILLLLFFFFFLTSPLSPAAAQLPPKPTNFSAFSISQSPWRPTQNLILFSPNSLFAAGFQPLPKNSNLFVFSVWYFNISTDSVVWSANQLSPVNRSAALVITRTGQLRLDDGSGRNLWPSNSNVSANPNSTQLILRNDGDLIYGTWESFQFPTNTILPNQTLNGTTIVSNNGKYAFKNSVNLTFGAERYWTSGNPFQIFLIEGQIIINNQTPIFPSDFNSTRLRKLVVDDDGNLKIFSFSPNLRRWGVVWQAHIELCEIFHTCGPNSICMSTGSYNSTYCVCAPGFIPDPRGGARQGCHRKLNISKIPKFLQLDFVSFRGGVKQISLQTPNISVCQANCLKNSSCVGYTFTFDGSAQCALQLDILSNGLWSPGMKIAAFVKVDNLETDHSNFNGMMYKLQTTCPVHITIRPPPVIKDNTTRNILIISTIFIAELISGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKQFTYAELKTATNDFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKDKKMLVYEHIPNGSLDKFLFPKPLPSDSEKNEAELSDETPSLDWNIRHRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRQNEETRVSMSRIRGTPGYVAPELVKLGSNWMTTKADVYSFGMVLLEIMSGRRNCEMKRSTVESAEWYFPGWAFEKAFVEERMEEILDDRIRDKWESGGHWGIVNRMMQTAMWCLQSLPEKRPSMGEVVKMLEGKLEIAPPEKPSIYFLSEHPTST 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4764971 4767394 + CmoCh15G009310.1 Cmo15g00931 398439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00931 807 Pfam Protein kinase domain 494 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00931 807 ProSiteProfiles Bulb-type lectin domain profile. 47 164 IPR001480 -
Cmo15g00931 807 ProSiteProfiles Protein kinase domain profile. 489 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00931 807 CDD B_lectin 56 160 IPR001480 -
Cmo15g00931 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 202 IPR036426 -
Cmo15g00931 807 CDD STKc_IRAK 495 785 - -
Cmo15g00931 807 Gene3D Phosphorylase Kinase; domain 1 459 563 - -
Cmo15g00931 807 ProSiteProfiles EGF-like domain profile. 261 297 IPR000742 -
Cmo15g00931 807 Gene3D - 47 158 IPR036426 -
Cmo15g00931 807 ProSiteProfiles PAN/Apple domain profile. 306 397 IPR003609 -
Cmo15g00931 807 SMART serkin_6 489 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00931 807 Pfam D-mannose binding lectin 91 171 IPR001480 -
Cmo15g00931 807 PIRSF SRK 185 807 IPR024171 GO:0004674
Cmo15g00931 807 PIRSF SRK 4 199 IPR024171 GO:0004674
Cmo15g00931 807 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Cmo15g00931 807 SUPERFAMILY Protein kinase-like (PK-like) 472 784 IPR011009 -
Cmo15g00931 807 Pfam S-locus glycoprotein domain 221 296 IPR000858 GO:0048544
Cmo15g00931 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cmo15g00931 807 Gene3D Transferase(Phosphotransferase) domain 1 564 791 - -
Cmo15g00931 807 PANTHER OS07G0415500 PROTEIN 16 802 - -
Cmo15g00931 807 PANTHER OS10G0101000 PROTEIN 16 802 - -
Cmo15g00931 807 SMART blect_4 52 160 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00931 - - - csv:101221701 1344.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01053 Cmo-Chr13:8787253 Cmo15g00931 Cmo-Chr15:4764971 1.99E-72 dispersed
Cmo15g00931 Cmo-Chr15:4764971 Cmo06g00272 Cmo-Chr6:1374638 8.60E-113 dispersed
Cmo15g00931 Cmo-Chr15:4764971 Cmo04g02229 Cmo-Chr4:16657655 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74925 PF00069 Pkinase 1.30E-44 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00931 Cmo_Chr15 FPKM 1.688153 1.625441 1.970426 2.199681 0.0 0.0 0.0 1.028507 1.013839 0.855045
Cmo15g00931 Cmo_Chr00 FPKM 0.166537 0.0 0.0 0.0 0.29163 0.393709 0.0 0.233047 0.378064 0.395443
Cmo15g00931 Cmo_Chr00 FPKM 0.35064 0.0 0.0 0.0 0.20937 0.360667 0.0 0.330418 0.348587 0.453477