Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00938 ATGGCTGCGACGAACACCGTCGGCGCAGGGTTTCTGGAGCGCCTCCAGTTTGGGGCCACAAAGGGGACGAGGCTCCGGGGTGGTGTCCGAACGCGGGCTGCACGCTGGCTGAGACGTCTCGCTGAATGCCGGGGGTCGACCCACGCCTGCACTGCGTCTTCCTCGTCCAAAAGTCCCAACGGTCCAAATCGCAGGGCTTGGCTACTGTCGCCGGTGGATGCGTCGTCGTTCGTCCGTTCTCCGGTGGCGCGTCGGCTTCCTCCTGCTTCCAACCACACTAGCGCTCCCTTCTCCCCAAAGGAGGCGGCCACTCCTAGGGTCACCGCCGACGAGGTGAAGGAATTTATCGAGAATCACACGGGAGACGGAACGGTGCTGACGGTGAGGATTTCCAAACTCAATGACGAAAAAGCCCGGTTCACATTCGCCACGGTCCAGTTCACCAGCAAACTCGGGGGCGAGTATGTGGTGGCGCAGGCGGCGGCGGAGAAGCGGCTGTGGTTCGGAAGTTCGTATCTGAAGGCTAGAAAAGTGGAGAGGGAGATCAAGACGGCGGCGAGAGTTCACGGCGAGTTGGAGAGAATGGAAAACGTGAATGTGCAGTGGGGAAGCCTGGTTTCGAAGGAGGAAATGAAGGTGATTTGGAAGGGGGGAAAATGGAGTGTGGAATATGGAATTGGAGTAAGGAAATTGGGGTTTTATTTGAGTTATGAGGGTGTTGAGTACAAAATGGAGCTCTGCTTTGAGAATATTCTCGGAGTTCAGCTTCGTTGCTCTGTTGATCGAGGTTCCAAGCTTTTTCTCATTCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAAGCTCCATTGTCTTCTTCCTCTCGATTATCTTCAGAGGAATCCACTGGTTTCCGTTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATCGGACAGTCTTTTGCTCTGTGTTTGGAACTTTCTCATGGAGATCAGCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAAGCTATGCTCCATTCATTCTACAGACAGGTTCTTCTTTATCCTCCATTTCAAATCTGGTACCTATCATTACTCCACCTCAAGGCTTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTGCTTCAACATGGTTATCTTCCTGGACCAGCGCTGGATAATGAATTTTTCCGACTGGTCGATTCCAGTCGATTTCGTCCTGATTATGTCGAATATGCCCTAGATAAACTTTTTCATTTCAAGGAATGTTGCTATGAGCCACAAAAATGGCTCAAGCAGCAATATCTGTCATTCTACAGCTCTAAGCAGCTTCCATGGAAACCTAATATTTCTTTGGATGATGGCTTAGTCTATGTGCACAGGGTTCAAATTACGCCTACTAAAGTGTACTTCCGTGGTCCGGAGGCGAATCTCTCTAATAGAGTAGTCCGTCACTTTATTGATGATGTAGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTTAGATAAACTTCATTCCATTGATTTATCTCCGCGTACATCTGCTGAAAATGATTTAAGAACTAGAGTTTATGATAGAGTACTGTCGGTGTTAAGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTTCTTGCTTTCTCGGCGAGTCAACTACGGGAAAATTCTTGTTGGATGTTTGCTTCGAGGAAGGGGCTTAGTGCAGCAGATATCAGAGAGTGGATGGGTGACCTTCGTCAGATAAGAAATGTGGCAAAATATGCTGCTCGACTAGGCCAATCTTTTGGCTCATCCAGAAGAACTTTGTGTGTTGAACAACATGAAATTGAAGTTATTTCTGATGTTGAAGTTGAAACCAATAAAATTACTTATTGTTTCTCTGATGGGATTGGAAAAATATCTGGAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGTTTAATCAGCCATACACCATCTGCCTTTCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTATCGACCCAACATCGACGAAGAAATTGTCGTTACGAAAGAGTATGTTGAAGTATACATCGCTCGACACCCAAGTCGATGTCTTGTCATGGAGCAAGTACCAACCCTGTTTTCTTAACCGTCAGGTGATAAACCTTCTGTCCACTCTTGGAATTAAGGACCGCGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTGGATTCCATTTTAGAAGATCCGTCGAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCAGGGGAAATGACTAGTATTCTTAAGGAATTGCTTTTGCTTTACAAGCCAAATGAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGCTAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGACGAAACCCGAACGTTAGAATACGGGCAGGTGTTTGTTCATTGCTCTCTCCCTGGAAGATCAAGCGAAAGTAATTTTGTTGTTAAGGGTAAAGTGGTGGTTGCTAAGAATCCCTGTTTACACCCAGGGGACGTGCGTTTGCTCGACGCTGTTGATGTGAAAGCTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTGGTTGGGATCCGGAGCTGACTCGTATTAAACCAGTTAAACCTATGAGCTACGAGCCTGCACCAACCATGCAGTTGGATCACGATGTCACAATCGAGGAAGTGCAGGGATACTTGGTCAAGTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACTGTGTTTGCAGATAAGAAGCCTAAAAAGGCAATGGCTGCTGAATGTATTAAACTTGCAAAATTATTCTCCATTGCTGTTGACTTCCCCAAGACCGGTGTGCCAGCAAACTTTCCACACAATCTTCGTGTTCGTGAGTATCCAGATTTCATGGAGAAGCCCGACAAGCCGACTTATGTATCGAATGGTGTTCTTGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCCGATGTCAACACCGTTGAAATCTTCTCTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAGGATTACTTGAGCGAAGCTTTTGAGTTCAAAGCCAGGTACGACTTCAAATTGGGGAACCTGATGGATTATTATGGTATCAAAACAGAACCTGAATTAATTAGTGGAAATATTTTGAGAATGGCCAAGTCTTTTGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAAATCACTAAGAAAAGAGGCAAGGTCTTGGTTCAATGAGAAAGGAAGTAAGTCTGCATACGACGAGGACGACAACAAAAATGAGGAATATGCAAAAGCATCTGCTTGGTACCGTGTCACGTATCATCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGCGTTTCTGACAAACTTATTCAAATCAAAAGAGAGAAGACATGCTTGATTATACGATTTCGCTTCACCCTCCGCCTCTCCTTTCACTTCTTGACTTTAAGTATGGCAGGAAGAAATCGCTCATCACGCCACATTGATGGTTACCGAGTTTCCCGTGATGTCCCTAGATCCTACGTAGAACGAGTACCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAGCTTGAATTGCAGCATAGGGAAATGCAGAGAATAATTTCTGATAATCGCATGGTGATTGATGATAATACAATACTTCAAAGGGAGTTATCAGCTGCAAAAGAAGAAATTCACAGATTGAACCAGGCTATACCCAAAGTTCTGTCTGAGAAAGAAGCACAATCCAGGGAGTTACTTGAAAGAGGTTTGAAACTAGAAGCTGAGCTTCGTGCTTCTGAGCCTTTAAAGTCTGAGGTTCTGCATTTAAGAGGTGAGATTCAGAAATTGAATAATTTGAAGCAAGATTTGTCTGCTAAAGTCCAAAGCCTCACAAAGGATGTTACTCGATTGCAAGCTGAAAATCAGCAGCTAAATTCTATGAGAGCAGATATGGATGGATTGCTCAAGGAGCTTATTGAGGCCAGGAGGGCTTATGAATATGAAAAGAAATCCAATGAAGAACAAAATGAACAAAAGCAAGCAATGGAGAAGAACCTTGTTTCAATGGCTCGTGAAATAGAGAAACTGCGTGCAGAGAAGCTCAACTTAGAGAGAGCACGGGGATTAGGTGCTGAGGGTTATGGGATCTTGAAAAGAAGTCCTGAAATGAGATATGCAGGTGGTCCATATGGTAATAACTATGGTAATTCATGGGCACCATATGAGAAGCGTAGCCGACGTTAA 4419 44.38 MAATNTVGAGFLERLQFGATKGTRLRGGVRTRAARWLRRLAECRGSTHACTASSSSKSPNGPNRRAWLLSPVDASSFVRSPVARRLPPASNHTSAPFSPKEAATPRVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQFTSKLGGEYVVAQAAAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVSKEEMKVIWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLFLIQLQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQHGYLPGPALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQLPWKPNISLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQLDHDVTIEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKNEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLIIRFRFTLRLSFHFLTLSMAGRNRSSRHIDGYRVSRDVPRSYVERVPAPLPIHPAALEEELELQHREMQRIISDNRMVIDDNTILQRELSAAKEEIHRLNQAIPKVLSEKEAQSRELLERGLKLEAELRASEPLKSEVLHLRGEIQKLNNLKQDLSAKVQSLTKDVTRLQAENQQLNSMRADMDGLLKELIEARRAYEYEKKSNEEQNEQKQAMEKNLVSMAREIEKLRAEKLNLERARGLGAEGYGILKRSPEMRYAGGPYGNNYGNSWAPYEKRSRR 1472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4798114 4809980 + CmoCh15G009380.1 Cmo15g00938 398446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00938 1472 Coils Coil 1300 1320 - -
Cmo15g00938 1472 Pfam RNA dependent RNA polymerase 464 1025 IPR007855 GO:0003968
Cmo15g00938 1472 PANTHER RNA-DEPENDENT RNA POLYMERASE 106 1204 - -
Cmo15g00938 1472 MobiDBLite consensus disorder prediction 1450 1472 - -
Cmo15g00938 1472 PANTHER RNA-DEPENDENT RNA POLYMERASE 106 1204 IPR007855 GO:0003968
Cmo15g00938 1472 Coils Coil 1331 1431 - -
Cmo15g00938 1472 MobiDBLite consensus disorder prediction 84 104 - -
Cmo15g00938 1472 Coils Coil 1275 1295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00938 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1779.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00087 Cmo-Chr4:472872 Cmo15g00938 Cmo-Chr15:4798114 0 dispersed
Cmo04g00089 Cmo-Chr4:478688 Cmo15g00938 Cmo-Chr15:4798114 0 dispersed
Cmo11g00654 Cmo-Chr11:3134072 Cmo15g00938 Cmo-Chr15:4798114 4.03E-17 dispersed
Cmo13g00032 Cmo-Chr13:213648 Cmo15g00938 Cmo-Chr15:4798114 3.63E-41 dispersed
Cmo15g00213 Cmo-Chr15:1034535 Cmo15g00938 Cmo-Chr15:4798114 1.30E-26 dispersed
Cmo10g00144 Cmo-Chr10:662653 Cmo15g00938 Cmo-Chr15:4798114 0 transposed
Cmo15g00938 Cmo-Chr15:4798114 Cmo04g02226 Cmo-Chr4:16634477 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00938 Cmo_Chr15 FPKM 383.391754 403.006927 242.152145 247.126846 251.736465 281.825897 254.246902 142.159546 137.914505 140.482269