Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00939 ATGCCAGAGCCTCGAGTTTTACAGCTAACGAATCAAAAAAGTTTTGGAAAAAAATCCAAATCGAGACCCCAAGAACCTAAAATGACTCGGAAAATCCGTGTCATCTGCAACGATCCAGACGCAACCGATTCGTCTTCGAGCGAAGATGAGGGTGAAATCGGAACCAAATCTCTCAAATTAAAACGAATCGTTCGAGAAATCCATCTACCCTTGTTCCCTTTTCAGTCCTCTAAATCAATGGACGTAACCACTAGCACTCAGAGTTCTTCACAGGACAGCAACAATGGCAGCAAAAACCCAGAGCTGAAGAGGAAGAGGGGTTTAGGCAGTAAAACCATGCCTAAAACCCTCTCCACCCGAAGAAGCGCCTCTCAATACAGAGGAGTTCGTCAAAGAAAGTGGGGCAAATGGGCCGCCGAAATCCGAGACCCTTTCAAGGGAGCTCGCATTTGGCTCGGGACTTACAACACTGCTGAAGAAGCCTCTCAGGCCTACGAATCAAAACGCCTCGAGTTCGAAAACGCCATGGCGGCCGCCCCCAAAACCAACGTCATCATCTCTTCCTCGTCTTCTTCCTCCGATGAGAACGAGGAAGAATCCGGCACCGCCATCTCTCAAACATCCCCAGCCGCCATTGTTGAAATGGAAACCTCTTCCTCTGTTTTGATAAAAGAGGAGGAAGTGATCGACACCAGTTTGATGAACGAACTCCAAATCCCCAATTTGGGATTCGTGGACGAGGATTTCGAAATCAATTTGGGGCTTCCAGAACTGGACCCCTTTTTCATGAACGACATTGGACTATTGTTTGACGACTTCTCCGGCATGGACGACCTTCAGATTTACGGGTTGGATGAGGATGAACCCAGTTGCTTGCCGGATTGCGATTTCAACGATTTTGGAAACGATGAAATATCCTGTTGGGTGGATGAAGCTTTGAATGTTCCTTGCTCATGA 957 47.54 MPEPRVLQLTNQKSFGKKSKSRPQEPKMTRKIRVICNDPDATDSSSSEDEGEIGTKSLKLKRIVREIHLPLFPFQSSKSMDVTTSTQSSSQDSNNGSKNPELKRKRGLGSKTMPKTLSTRRSASQYRGVRQRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRLEFENAMAAAPKTNVIISSSSSSSDENEEESGTAISQTSPAAIVEMETSSSVLIKEEEVIDTSLMNELQIPNLGFVDEDFEINLGLPELDPFFMNDIGLLFDDFSGMDDLQIYGLDEDEPSCLPDCDFNDFGNDEISCWVDEALNVPCS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4813333 4814289 - CmoCh15G009390.1 Cmo15g00939 398447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00939 318 MobiDBLite consensus disorder prediction 1 57 - -
Cmo15g00939 318 ProSiteProfiles AP2/ERF domain profile. 125 185 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 MobiDBLite consensus disorder prediction 187 209 - -
Cmo15g00939 318 MobiDBLite consensus disorder prediction 78 127 - -
Cmo15g00939 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 20 317 - -
Cmo15g00939 318 SMART rav1_2 125 191 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 SUPERFAMILY DNA-binding domain 124 176 IPR016177 GO:0003677
Cmo15g00939 318 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 PIRSF PTI6 4 280 IPR017392 GO:0003700
Cmo15g00939 318 PIRSF PTI6 263 303 IPR017392 GO:0003700
Cmo15g00939 318 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Cmo15g00939 318 CDD AP2 124 172 IPR001471 GO:0003700|GO:0006355
Cmo15g00939 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 317 - -
Cmo15g00939 318 MobiDBLite consensus disorder prediction 18 37 - -
Cmo15g00939 318 MobiDBLite consensus disorder prediction 78 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00939 - - - cmo:103488620 481.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g00939 Cmo18g01035 CCT
Cmo04g01583 Cmo15g00939 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01583 Cmo-Chr4:8083335 Cmo15g00939 Cmo-Chr15:4813333 1.77E-78 dispersed
Cmo06g01272 Cmo-Chr6:9594323 Cmo15g00939 Cmo-Chr15:4813333 3.37E-54 dispersed
Cmo14g01925 Cmo-Chr14:14282987 Cmo15g00939 Cmo-Chr15:4813333 3.84E-60 dispersed
Cmo15g00939 Cmo-Chr15:4813333 Cmo18g00032 Cmo-Chr18:189482 1.46E-28 dispersed
Cmo15g00939 Cmo-Chr15:4813333 Cmo18g01035 Cmo-Chr18:11107558 1.50E-59 wgd
Cmo15g00939 Cmo-Chr15:4813333 Cmo04g02150 Cmo-Chr4:15078523 7.10E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11186 PF00847 AP2 4.90E-12 CL0081 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00939 Cmo_Chr15 FPKM 141.316498 158.702637 107.072548 117.331322 110.345757 56.944328 125.417305 60.904701 70.981636 79.40789