Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00946 ATGCAGAGCTTTGAAAACCCAGATCAGTTCTATGTCCATTCTTCTTCTTCTTCCGTTGTTCTCTGGGGAGATGACAATGGACGATTCCACACGCGTTTTCTTCCGGATATGGAGCTTCAACAATCCGCTGTTGCTGTTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAGGACGGATGTGGGTTCAATAGGAGGAACAGGGTATTTAGACACGGGACAGCAATCGATGCGGTTGAAGAAGCTGGCTCCGCCGCAGACGATGGCGGCTGGGAGCTTTGACAACTGGGGCGAGTCAGCCATGGCAGATACTAGCCAACAGACTGACACTTCCACAGACATCGACACCGATGAAAGAAACCAGCTTCAGGTAGTTGCACATGGAACTCTCATGGCGGACTCCATGGGTCAATCTAGAGCTAAATCTGTAGATCAGAAGACGCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCTCGGAAGAGTCGATTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAGTAGTCGACAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCGCGCCAACAGGGCACGTTTGTGGCTTCTGGGGCTGGAGACCATTGTTTATCAATGGCAGGAAATGGTGCCTTGGCTTTTGATCTCGACTACGCGCGGTGGCTCGACGAGCATCAACGGCTGGTCAATGATCTAAGAGCATCTGCAAATTCTCAATTGGGAGATGAGGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAGCTCTTCAGGCTGAAGAGCATAGGCGCCAAGGCCGACGTTTTTCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAGCTTCTAAAGATAGTTGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGCTGATGGGTATATGCAATTTGCAGCAATCATCCCAACAAGCTGAAGATGCATTGTCACAAGGGATAGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTATAGGTCCAGCCAGTTCAGGGAATGTTGCTGATTACATGGGTCAAATGGCGATTGCAATGAGCAAGCTAACGACGCTCGAGAACTTTCTACATCAGGCTGATCTGTTGAGGCAACAAACGCTCCAACAGATGCATAGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTTATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCACTATGGTTAGCACGACCAAGAGAGTGA 1365 48.64 MQSFENPDQFYVHSSSSSVVLWGDDNGRFHTRFLPDMELQQSAVAVAAFHQDDAVDLSPSSVFGLKSTHNTAFPIHLPYGRTDVGSIGGTGYLDTGQQSMRLKKLAPPQTMAAGSFDNWGESAMADTSQQTDTSTDIDTDERNQLQVVAHGTLMADSMGQSRAKSVDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRQRLAQLEQELHRARQQGTFVASGAGDHCLSMAGNGALAFDLDYARWLDEHQRLVNDLRASANSQLGDEELRFLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASIGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4867276 4870675 - CmoCh15G009460.1 Cmo15g00946 398454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00946 454 CDD bZIP_HBP1b-like 169 221 - -
Cmo15g00946 454 Gene3D - 168 218 - -
Cmo15g00946 454 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Cmo15g00946 454 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 49 454 - -
Cmo15g00946 454 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 211 IPR004827 GO:0003700|GO:0006355
Cmo15g00946 454 SUPERFAMILY Leucine zipper domain 169 212 IPR046347 GO:0003700|GO:0006355
Cmo15g00946 454 Coils Coil 188 215 - -
Cmo15g00946 454 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351|GO:0043565
Cmo15g00946 454 Pfam bZIP transcription factor 169 208 IPR004827 GO:0003700|GO:0006355
Cmo15g00946 454 Pfam Seed dormancy control 253 326 IPR025422 GO:0006351|GO:0043565
Cmo15g00946 454 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
Cmo15g00946 454 PANTHER TRANSCRIPTION FACTOR TGA9 49 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00438 Cmo-Chr14:2091037 Cmo15g00946 Cmo-Chr15:4867276 1.23E-122 dispersed
Cmo15g00946 Cmo-Chr15:4867276 Cmo18g00857 Cmo-Chr18:9890829 8.52E-161 dispersed
Cmo15g00946 Cmo-Chr15:4867276 Cmo04g02157 Cmo-Chr4:15311231 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11187 PF14144 DOG1 3.50E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00946 K14431 - csv:101210308 785.793